Search of human proteins with 51242968

Search of human proteins with 51242968

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|51242968 ER lipid raft associated 2 isoform 2 [Homo sapiens]
         (152 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|51242966 ER lipid raft associated 2 isoform 2 [Homo sapiens]       308   2e-84
gi|51242968 ER lipid raft associated 2 isoform 2 [Homo sapiens]       308   2e-84
gi|6005721 ER lipid raft associated 2 isoform 1 [Homo sapiens]        286   4e-78
gi|154800489 ER lipid raft associated 1 [Homo sapiens]                228   2e-60
gi|154800487 ER lipid raft associated 1 [Homo sapiens]                228   2e-60
gi|7657615 podocin [Homo sapiens]                                      31   0.46 
gi|13559514 phosphatidylinositol 4-kinase type 2 alpha [Homo sap...    28   2.3  
gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]                     28   3.9  

>gi|51242966 ER lipid raft associated 2 isoform 2 [Homo sapiens]
          Length = 152

 Score =  308 bits (788), Expect = 2e-84
 Identities = 152/152 (100%), Positives = 152/152 (100%)

Query: 1   MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK 60
           MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK
Sbjct: 1   MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK 60

Query: 61  SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI 120
           SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI
Sbjct: 61  SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI 120

Query: 121 HHELNQFCSVHTLQEVYIELFGLENDFSQESS 152
           HHELNQFCSVHTLQEVYIELFGLENDFSQESS
Sbjct: 121 HHELNQFCSVHTLQEVYIELFGLENDFSQESS 152


>gi|51242968 ER lipid raft associated 2 isoform 2 [Homo sapiens]
          Length = 152

 Score =  308 bits (788), Expect = 2e-84
 Identities = 152/152 (100%), Positives = 152/152 (100%)

Query: 1   MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK 60
           MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK
Sbjct: 1   MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK 60

Query: 61  SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI 120
           SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI
Sbjct: 61  SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI 120

Query: 121 HHELNQFCSVHTLQEVYIELFGLENDFSQESS 152
           HHELNQFCSVHTLQEVYIELFGLENDFSQESS
Sbjct: 121 HHELNQFCSVHTLQEVYIELFGLENDFSQESS 152


>gi|6005721 ER lipid raft associated 2 isoform 1 [Homo sapiens]
          Length = 339

 Score =  286 bits (733), Expect = 4e-78
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK 60
           MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK
Sbjct: 1   MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK 60

Query: 61  SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI 120
           SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI
Sbjct: 61  SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI 120

Query: 121 HHELNQFCSVHTLQEVYIELF 141
           HHELNQFCSVHTLQEVYIELF
Sbjct: 121 HHELNQFCSVHTLQEVYIELF 141


>gi|154800489 ER lipid raft associated 1 [Homo sapiens]
          Length = 348

 Score =  228 bits (581), Expect = 2e-60
 Identities = 107/141 (75%), Positives = 120/141 (85%)

Query: 1   MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK 60
           M Q   +VA         L++++HKIEEGH+ VYYRGGALLTS SGPG+H+MLPFIT+++
Sbjct: 3   MTQARVLVAAVVGLVAVLLYASIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFR 62

Query: 61  SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI 120
           SVQTTLQTDEVKNVPCGTSGGVMIY DRIEVVN L P AV+DIV+NYTADYDK LIFNKI
Sbjct: 63  SVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKI 122

Query: 121 HHELNQFCSVHTLQEVYIELF 141
           HHELNQFCS HTLQEVYIELF
Sbjct: 123 HHELNQFCSAHTLQEVYIELF 143


>gi|154800487 ER lipid raft associated 1 [Homo sapiens]
          Length = 348

 Score =  228 bits (581), Expect = 2e-60
 Identities = 107/141 (75%), Positives = 120/141 (85%)

Query: 1   MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK 60
           M Q   +VA         L++++HKIEEGH+ VYYRGGALLTS SGPG+H+MLPFIT+++
Sbjct: 3   MTQARVLVAAVVGLVAVLLYASIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFR 62

Query: 61  SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI 120
           SVQTTLQTDEVKNVPCGTSGGVMIY DRIEVVN L P AV+DIV+NYTADYDK LIFNKI
Sbjct: 63  SVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKI 122

Query: 121 HHELNQFCSVHTLQEVYIELF 141
           HHELNQFCS HTLQEVYIELF
Sbjct: 123 HHELNQFCSAHTLQEVYIELF 143


>gi|7657615 podocin [Homo sapiens]
          Length = 383

 Score = 30.8 bits (68), Expect = 0.46
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 15  FCASLFSAVHKIEEGHIGVYYRGGALLTSTS-GPGFHLMLPFITSYKSVQTTLQTDEV 71
           F  S++  V  ++E    + +R G LL   + GPG    LP + +Y  V   LQT E+
Sbjct: 117 FPFSIWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFFFLPCLDTYHKVDLRLQTLEI 174


>gi|13559514 phosphatidylinositol 4-kinase type 2 alpha [Homo
           sapiens]
          Length = 479

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 11/44 (25%), Positives = 26/44 (59%)

Query: 55  FITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPN 98
           F+  YK     L+  E + +P  T+  +++ F+R+ V+++++ N
Sbjct: 263 FVEGYKDADYWLRRFEAEPLPENTNRQLLLQFERLVVLDYIIRN 306


>gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]
          Length = 398

 Score = 27.7 bits (60), Expect = 3.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 33  VYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPC 76
           + +R G + T   GPG  L+LPFI S++ V   L+T      PC
Sbjct: 89  IVFRLGRIRTP-QGPGMVLLLPFIDSFQRVD--LRTRAFNVPPC 129


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,235,683
Number of Sequences: 37866
Number of extensions: 198091
Number of successful extensions: 346
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 8
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.