BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1 [Homo sapiens] (223 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1 [... 462 e-131 gi|22212934 sigma non-opioid intracellular receptor 1 isoform 2 ... 379 e-106 gi|24431977 XK, Kell blood group complex subunit-related family,... 32 0.33 gi|8922911 radical S-adenosyl methionine domain containing 1 [Ho... 32 0.44 gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens] 29 3.7 gi|239747654 PREDICTED: hypothetical protein XP_002348126 [Homo ... 28 6.3 gi|52317122 olfactory receptor, family 5, subfamily D, member 14... 28 6.3 gi|169217624 PREDICTED: hypothetical protein isoform 1 [Homo sap... 28 8.2 gi|169217622 PREDICTED: hypothetical protein isoform 2 [Homo sap... 28 8.2 >gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1 [Homo sapiens] Length = 223 Score = 462 bits (1190), Expect = e-131 Identities = 223/223 (100%), Positives = 223/223 (100%) Query: 1 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 60 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR Sbjct: 1 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 60 Query: 61 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 120 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY Sbjct: 61 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 120 Query: 121 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 180 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS Sbjct: 121 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 180 Query: 181 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 223 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP Sbjct: 181 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 223 >gi|22212934 sigma non-opioid intracellular receptor 1 isoform 2 [Homo sapiens] Length = 192 Score = 379 bits (974), Expect = e-106 Identities = 192/223 (86%), Positives = 192/223 (86%), Gaps = 31/223 (13%) Query: 1 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 60 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR Sbjct: 1 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 60 Query: 61 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 120 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHS Sbjct: 61 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHS--- 117 Query: 121 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 180 GETVVHGPGEATAVEWGPNTWMVEYGRGVIPS Sbjct: 118 ----------------------------GETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 149 Query: 181 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 223 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP Sbjct: 150 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 192 >gi|24431977 XK, Kell blood group complex subunit-related family, member 8 [Homo sapiens] Length = 395 Score = 32.3 bits (72), Expect = 0.33 Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 4/34 (11%) Query: 1 MQWAVGRRWAWAALLLA---VAAVLTQVV-WLWL 30 +Q+A+G R+ WAAL+LA +A+V Q+ WLWL Sbjct: 35 VQYALGGRYLWAALVLALLGLASVALQLFSWLWL 68 >gi|8922911 radical S-adenosyl methionine domain containing 1 [Homo sapiens] Length = 442 Score = 32.0 bits (71), Expect = 0.44 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 12/97 (12%) Query: 28 LWLGTQSFVFQREEIAQLARQYAGLDHELAFSRLIVELRRLHPGHVLPDEELQWVFVNAG 87 L +G QS E+ L R ++ D R + E RRL PG V D L G Sbjct: 153 LSIGLQSL--DDTELRLLGRTHSACDA----LRTLAEARRLFPGRVSVDLMLGLPAQQVG 206 Query: 88 GWMGAM------CLLHASLSEYVLLFGTALGSRGHSG 118 W+G + C H SL + L GTAL ++ G Sbjct: 207 PWLGQLQELLHHCDDHLSLYQLSLERGTALFAQVQRG 243 >gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens] Length = 703 Score = 28.9 bits (63), Expect = 3.7 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Query: 5 VGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLAR----QYAGLDHEL--AF 58 VGR W L +AA LT+ + L QS + E++AQ R Q A L+ +L A Sbjct: 581 VGRAWDPEKLAQELAASLTRTLDLQEQLQSLRRELEQVAQKGRARRSQSAELNRDLCKAH 640 Query: 59 SRLIVELRRLH 69 S L++ R H Sbjct: 641 SALVLAFRGAH 651 >gi|239747654 PREDICTED: hypothetical protein XP_002348126 [Homo sapiens] Length = 1032 Score = 28.1 bits (61), Expect = 6.3 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 128 IISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALA 187 I+SG G K+ V PG+ +V GPG+ A+ GP +V I S+L A+ Sbjct: 958 IVSGLGKAIVSGPGKAIVSGPGKAIVSGPGK--AIVSGPGKAIVSSPGKAIVSSLGKAIV 1015 Query: 188 DTV 190 ++ Sbjct: 1016 SSL 1018 >gi|52317122 olfactory receptor, family 5, subfamily D, member 14 [Homo sapiens] Length = 314 Score = 28.1 bits (61), Expect = 6.3 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 7/47 (14%) Query: 93 MCLLHASLSEYVLLFGTALGSRGHSGRY-----WAE--ISDTIISGT 132 MC L L+ YV +F T L R SGR+ WA S TI GT Sbjct: 210 MCTLLIILTSYVFIFVTVLKIRSVSGRHKAFSTWASHLTSITIFHGT 256 >gi|169217624 PREDICTED: hypothetical protein isoform 1 [Homo sapiens] Length = 186 Score = 27.7 bits (60), Expect = 8.2 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 118 GRYWAEISDTIISGT--FHQWREGTTKSEVFYPGETVVHGPGEATAVEW 164 G+ W + + + T + QW G T ++ F GE V PG+A W Sbjct: 38 GQVWVSLVSSGLEFTRRWWQWETGCTGTDFFVAGEDNVLPPGKAAHGFW 86 >gi|169217622 PREDICTED: hypothetical protein isoform 2 [Homo sapiens] Length = 186 Score = 27.7 bits (60), Expect = 8.2 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 118 GRYWAEISDTIISGT--FHQWREGTTKSEVFYPGETVVHGPGEATAVEW 164 G+ W + + + T + QW G T ++ F GE V PG+A W Sbjct: 38 GQVWVSLVSSGLEFTRRWWQWETGCTGTDFFVAGEDNVLPPGKAAHGFW 86 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.324 0.137 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,667,995 Number of Sequences: 37866 Number of extensions: 368043 Number of successful extensions: 1067 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 1016 Number of HSP's gapped (non-prelim): 93 length of query: 223 length of database: 18,247,518 effective HSP length: 98 effective length of query: 125 effective length of database: 14,536,650 effective search space: 1817081250 effective search space used: 1817081250 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.