Search of human proteins with 5032117

Search of human proteins with 5032117

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1
[Homo sapiens]
         (223 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1 [...   462   e-131
gi|22212934 sigma non-opioid intracellular receptor 1 isoform 2 ...   379   e-106
gi|24431977 XK, Kell blood group complex subunit-related family,...    32   0.33 
gi|8922911 radical S-adenosyl methionine domain containing 1 [Ho...    32   0.44 
gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens]         29   3.7  
gi|239747654 PREDICTED: hypothetical protein XP_002348126 [Homo ...    28   6.3  
gi|52317122 olfactory receptor, family 5, subfamily D, member 14...    28   6.3  
gi|169217624 PREDICTED: hypothetical protein isoform 1 [Homo sap...    28   8.2  
gi|169217622 PREDICTED: hypothetical protein isoform 2 [Homo sap...    28   8.2  

>gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1
           [Homo sapiens]
          Length = 223

 Score =  462 bits (1190), Expect = e-131
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 60
           MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
Sbjct: 1   MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 60

Query: 61  LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 120
           LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
Sbjct: 61  LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 120

Query: 121 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 180
           WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
Sbjct: 121 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 180

Query: 181 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 223
           TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
Sbjct: 181 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 223


>gi|22212934 sigma non-opioid intracellular receptor 1 isoform 2
           [Homo sapiens]
          Length = 192

 Score =  379 bits (974), Expect = e-106
 Identities = 192/223 (86%), Positives = 192/223 (86%), Gaps = 31/223 (13%)

Query: 1   MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 60
           MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
Sbjct: 1   MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 60

Query: 61  LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 120
           LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHS   
Sbjct: 61  LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHS--- 117

Query: 121 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 180
                                       GETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
Sbjct: 118 ----------------------------GETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 149

Query: 181 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 223
           TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
Sbjct: 150 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 192


>gi|24431977 XK, Kell blood group complex subunit-related family,
          member 8 [Homo sapiens]
          Length = 395

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 4/34 (11%)

Query: 1  MQWAVGRRWAWAALLLA---VAAVLTQVV-WLWL 30
          +Q+A+G R+ WAAL+LA   +A+V  Q+  WLWL
Sbjct: 35 VQYALGGRYLWAALVLALLGLASVALQLFSWLWL 68


>gi|8922911 radical S-adenosyl methionine domain containing 1 [Homo
           sapiens]
          Length = 442

 Score = 32.0 bits (71), Expect = 0.44
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 28  LWLGTQSFVFQREEIAQLARQYAGLDHELAFSRLIVELRRLHPGHVLPDEELQWVFVNAG 87
           L +G QS      E+  L R ++  D      R + E RRL PG V  D  L       G
Sbjct: 153 LSIGLQSL--DDTELRLLGRTHSACDA----LRTLAEARRLFPGRVSVDLMLGLPAQQVG 206

Query: 88  GWMGAM------CLLHASLSEYVLLFGTALGSRGHSG 118
            W+G +      C  H SL +  L  GTAL ++   G
Sbjct: 207 PWLGQLQELLHHCDDHLSLYQLSLERGTALFAQVQRG 243


>gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens]
          Length = 703

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 5   VGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLAR----QYAGLDHEL--AF 58
           VGR W    L   +AA LT+ + L    QS   + E++AQ  R    Q A L+ +L  A 
Sbjct: 581 VGRAWDPEKLAQELAASLTRTLDLQEQLQSLRRELEQVAQKGRARRSQSAELNRDLCKAH 640

Query: 59  SRLIVELRRLH 69
           S L++  R  H
Sbjct: 641 SALVLAFRGAH 651


>gi|239747654 PREDICTED: hypothetical protein XP_002348126 [Homo
            sapiens]
          Length = 1032

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 128  IISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALA 187
            I+SG       G  K+ V  PG+ +V GPG+  A+  GP   +V      I S+L  A+ 
Sbjct: 958  IVSGLGKAIVSGPGKAIVSGPGKAIVSGPGK--AIVSGPGKAIVSSPGKAIVSSLGKAIV 1015

Query: 188  DTV 190
             ++
Sbjct: 1016 SSL 1018


>gi|52317122 olfactory receptor, family 5, subfamily D, member 14
           [Homo sapiens]
          Length = 314

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 93  MCLLHASLSEYVLLFGTALGSRGHSGRY-----WAE--ISDTIISGT 132
           MC L   L+ YV +F T L  R  SGR+     WA    S TI  GT
Sbjct: 210 MCTLLIILTSYVFIFVTVLKIRSVSGRHKAFSTWASHLTSITIFHGT 256


>gi|169217624 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 186

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 118 GRYWAEISDTIISGT--FHQWREGTTKSEVFYPGETVVHGPGEATAVEW 164
           G+ W  +  + +  T  + QW  G T ++ F  GE  V  PG+A    W
Sbjct: 38  GQVWVSLVSSGLEFTRRWWQWETGCTGTDFFVAGEDNVLPPGKAAHGFW 86


>gi|169217622 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 186

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 118 GRYWAEISDTIISGT--FHQWREGTTKSEVFYPGETVVHGPGEATAVEW 164
           G+ W  +  + +  T  + QW  G T ++ F  GE  V  PG+A    W
Sbjct: 38  GQVWVSLVSSGLEFTRRWWQWETGCTGTDFFVAGEDNVLPPGKAAHGFW 86


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.137    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,667,995
Number of Sequences: 37866
Number of extensions: 368043
Number of successful extensions: 1067
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 93
length of query: 223
length of database: 18,247,518
effective HSP length: 98
effective length of query: 125
effective length of database: 14,536,650
effective search space: 1817081250
effective search space used: 1817081250
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.