Search of human proteins with 49169841

Search of human proteins with 49169841

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|49169841 hypothetical protein LOC414919 [Homo sapiens]
         (216 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|49169841 hypothetical protein LOC414919 [Homo sapiens]             453   e-128
gi|45120115 hypothetical protein LOC56905 [Homo sapiens]               32   0.31 
gi|239756045 PREDICTED: hypothetical protein [Homo sapiens]            30   1.6  
gi|27437015 calcium/calmodulin-dependent protein kinase kinase 2...    28   4.5  
gi|27437025 calcium/calmodulin-dependent protein kinase kinase 2...    28   4.5  
gi|197116396 hypothetical protein LOC284677 [Homo sapiens]             28   4.5  
gi|61966777 V-set and immunoglobulin domain containing 8 [Homo s...    28   4.5  
gi|58761510 ischemia/reperfusion inducible protein [Homo sapiens]      28   7.8  
gi|126012562 low density lipoprotein-related protein 1 [Homo sap...    28   7.8  

>gi|49169841 hypothetical protein LOC414919 [Homo sapiens]
          Length = 216

 Score =  453 bits (1166), Expect = e-128
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MWPPCGTLRTLALARSRGARACSGDGGVSYTQGQSPEPRTREYFYYVDHQGQLFLDDSKM 60
           MWPPCGTLRTLALARSRGARACSGDGGVSYTQGQSPEPRTREYFYYVDHQGQLFLDDSKM
Sbjct: 1   MWPPCGTLRTLALARSRGARACSGDGGVSYTQGQSPEPRTREYFYYVDHQGQLFLDDSKM 60

Query: 61  KNFITCFKDPQFLVTFFSRLRPNRSGRYEAAFPFLSPCGRERNFLRCEDRPVVFTHLLTA 120
           KNFITCFKDPQFLVTFFSRLRPNRSGRYEAAFPFLSPCGRERNFLRCEDRPVVFTHLLTA
Sbjct: 61  KNFITCFKDPQFLVTFFSRLRPNRSGRYEAAFPFLSPCGRERNFLRCEDRPVVFTHLLTA 120

Query: 121 DHGPPRLSYCGGGEALAVPFEPARLLPLAANGRLYHPAPERAGGVGLVRSALAFELSACF 180
           DHGPPRLSYCGGGEALAVPFEPARLLPLAANGRLYHPAPERAGGVGLVRSALAFELSACF
Sbjct: 121 DHGPPRLSYCGGGEALAVPFEPARLLPLAANGRLYHPAPERAGGVGLVRSALAFELSACF 180

Query: 181 EYGPGAPALPSHVRWQGRRLALTMDLAPLLLAARSP 216
           EYGPGAPALPSHVRWQGRRLALTMDLAPLLLAARSP
Sbjct: 181 EYGPGAPALPSHVRWQGRRLALTMDLAPLLLAARSP 216


>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
          Length = 1047

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 142 PARLLPLAANGRLYHPAPERAGGVGLVRSALAFELSACFEYGPGAPALPSHVRWQGRRLA 201
           P  LLP +     Y P P  A    + R+ L + LS C   G GA   P  V W      
Sbjct: 109 PVELLPFSPQAHSY-PGPPLAAPKPVYRNPLCYGLSTCL--GEGAVKRPLDVDW------ 159

Query: 202 LTMDLAPLLLAARSP 216
            T+   PLL +A  P
Sbjct: 160 -TLATGPLLPSADPP 173


>gi|239756045 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 16/101 (15%)

Query: 86  GRYEAAFPFLSPCGRERNFLRCEDRPVVFTHLLTADHGPPRLSYCGGGEALAVPFEPARL 145
           G  E+   F  P  R+  F+   DRP           GPP L        L+  F    L
Sbjct: 56  GCLESLSYFFVPWWRDVGFISLPDRP-----------GPPCLRL-----HLSFLFGGCGL 99

Query: 146 LPLAANGRLYHPAPERAGGVGLVRSALAFELSACFEYGPGA 186
            PL A  R    APE +G   L         +AC + GP A
Sbjct: 100 PPLPAPLRKLGGAPEASGHCCLCSPPAGLHTNACDDIGPSA 140


>gi|27437015 calcium/calmodulin-dependent protein kinase kinase 2
           beta isoform 1 [Homo sapiens]
          Length = 588

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 155 YHPAPERAGGVGLVRSALAFELSACFEYGPGAPA 188
           + PAP   GG  LVR +   E  +C+   PG+PA
Sbjct: 543 HRPAPRGGGGSALVRGSPCVE--SCWAPAPGSPA 574


>gi|27437025 calcium/calmodulin-dependent protein kinase kinase 2
           beta isoform 3 [Homo sapiens]
          Length = 545

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 155 YHPAPERAGGVGLVRSALAFELSACFEYGPGAPA 188
           + PAP   GG  LVR +   E  +C+   PG+PA
Sbjct: 500 HRPAPRGGGGSALVRGSPCVE--SCWAPAPGSPA 531


>gi|197116396 hypothetical protein LOC284677 [Homo sapiens]
          Length = 235

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 3  PPCGTLRTLALARSRGARACSGDGGVSYTQGQSPEP 38
          PPCG    +ALA    A AC       Y + +S EP
Sbjct: 60 PPCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEP 95


>gi|61966777 V-set and immunoglobulin domain containing 8 [Homo
           sapiens]
          Length = 414

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 3   PPCGTLRTLALARSRGARACSGDGGVSYTQGQSPEP 38
           PPCG    +ALA    A AC       Y + +S EP
Sbjct: 363 PPCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEP 398


>gi|58761510 ischemia/reperfusion inducible protein [Homo sapiens]
          Length = 279

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 143 ARLLPLAANGRLYHPAPERAGGVGLVRSALA 173
           ARLL L  +G +   +PERAG    +R+A+A
Sbjct: 45  ARLLRLPGSGAVQAASPERAGWTEALRAAVA 75


>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
          Length = 4544

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 6    GTLRTLALARSRGARACSGDGGVSYTQGQSPEPRTREYFYYVDHQGQLFL------DDSK 59
            G  + L L R RG RAC+   G+    G S     REY  Y+ +  +  L      D+  
Sbjct: 2164 GGCQQLCLYRGRGQRACACAHGMLAEDGAS----CREYAGYLLYSERTILKSIHLSDERN 2219

Query: 60   MKNFITCFKDPQFLVTFFSRLRPNRSG 86
            +   +  F+DP+ +    +     R+G
Sbjct: 2220 LNAPVQPFEDPEHMKNVIALAFDYRAG 2246


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.141    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,009,528
Number of Sequences: 37866
Number of extensions: 512084
Number of successful extensions: 1196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1192
Number of HSP's gapped (non-prelim): 10
length of query: 216
length of database: 18,247,518
effective HSP length: 98
effective length of query: 118
effective length of database: 14,536,650
effective search space: 1715324700
effective search space used: 1715324700
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.