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Search of human proteins with 13273311
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13273311 protein O-fucosyltransferase 2 isoform A [Homo
sapiens]
(424 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13273311 protein O-fucosyltransferase 2 isoform A [Homo sapiens] 883 0.0
gi|34147487 protein O-fucosyltransferase 2 isoform C [Homo sapiens] 789 0.0
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] 33 0.38
gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens] 33 0.38
gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens] 33 0.38
gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens] 33 0.38
gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens] 33 0.38
gi|19743819 integrin beta 1 isoform 1D precursor [Homo sapiens] 33 0.38
gi|221316699 maltase-glucoamylase [Homo sapiens] 29 7.1
gi|169209609 PREDICTED: hypothetical protein [Homo sapiens] 29 7.1
gi|169210596 PREDICTED: hypothetical protein [Homo sapiens] 29 7.1
gi|169210141 PREDICTED: hypothetical protein [Homo sapiens] 29 7.1
gi|29029601 DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Homo sapi... 29 7.1
gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [H... 29 9.2
gi|7661844 coiled-coil domain containing 22 [Homo sapiens] 29 9.2
>gi|13273311 protein O-fucosyltransferase 2 isoform A [Homo sapiens]
Length = 424
Score = 883 bits (2282), Expect = 0.0
Identities = 424/424 (100%), Positives = 424/424 (100%)
Query: 1 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR 60
MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
Sbjct: 1 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR 60
Query: 61 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI 120
DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
Sbjct: 61 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI 120
Query: 121 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW 180
EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
Sbjct: 121 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW 180
Query: 181 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM 240
GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
Sbjct: 181 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM 240
Query: 241 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW 300
VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
Sbjct: 241 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW 300
Query: 301 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE 360
GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
Sbjct: 301 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE 360
Query: 361 LYKDGGVAIIDQWICAHARCLPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHTV 420
LYKDGGVAIIDQWICAHARCLPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHTV
Sbjct: 361 LYKDGGVAIIDQWICAHARCLPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHTV 420
Query: 421 CLLV 424
CLLV
Sbjct: 421 CLLV 424
>gi|34147487 protein O-fucosyltransferase 2 isoform C [Homo sapiens]
Length = 429
Score = 789 bits (2037), Expect = 0.0
Identities = 383/390 (98%), Positives = 385/390 (98%), Gaps = 1/390 (0%)
Query: 1 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR 60
MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
Sbjct: 1 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR 60
Query: 61 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI 120
DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
Sbjct: 61 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI 120
Query: 121 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW 180
EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
Sbjct: 121 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW 180
Query: 181 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM 240
GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
Sbjct: 181 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM 240
Query: 241 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW 300
VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
Sbjct: 241 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW 300
Query: 301 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE 360
GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
Sbjct: 301 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE 360
Query: 361 LYKDGGVAIIDQWICAHAR-CLPTSLSAES 389
LYKDGGVAIIDQWICAHAR + TS+S S
Sbjct: 361 LYKDGGVAIIDQWICAHARFFIGTSVSTFS 390
>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
Length = 825
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 292 HLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPE 348
HL + H D PS+ V+K+ + + +F T+ + Y+ELK L+P+
Sbjct: 302 HLENNMYTMSHYYDYPSIAHLVQKLSE----NNIQTIFAVTEEFQPVYKELKNLIPK 354
>gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens]
Length = 789
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 292 HLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPE 348
HL + H D PS+ V+K+ + + +F T+ + Y+ELK L+P+
Sbjct: 302 HLENNMYTMSHYYDYPSIAHLVQKLSE----NNIQTIFAVTEEFQPVYKELKNLIPK 354
>gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens]
Length = 798
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 292 HLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPE 348
HL + H D PS+ V+K+ + + +F T+ + Y+ELK L+P+
Sbjct: 302 HLENNMYTMSHYYDYPSIAHLVQKLSE----NNIQTIFAVTEEFQPVYKELKNLIPK 354
>gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens]
Length = 798
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 292 HLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPE 348
HL + H D PS+ V+K+ + + +F T+ + Y+ELK L+P+
Sbjct: 302 HLENNMYTMSHYYDYPSIAHLVQKLSE----NNIQTIFAVTEEFQPVYKELKNLIPK 354
>gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens]
Length = 819
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 292 HLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPE 348
HL + H D PS+ V+K+ + + +F T+ + Y+ELK L+P+
Sbjct: 302 HLENNMYTMSHYYDYPSIAHLVQKLSE----NNIQTIFAVTEEFQPVYKELKNLIPK 354
>gi|19743819 integrin beta 1 isoform 1D precursor [Homo sapiens]
Length = 801
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 292 HLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPE 348
HL + H D PS+ V+K+ + + +F T+ + Y+ELK L+P+
Sbjct: 302 HLENNMYTMSHYYDYPSIAHLVQKLSE----NNIQTIFAVTEEFQPVYKELKNLIPK 354
>gi|221316699 maltase-glucoamylase [Homo sapiens]
Length = 1857
Score = 29.3 bits (64), Expect = 7.1
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 220 AENLLHDHYGGKEYWDTRRSMVFARHL--REVGDEFRSRHLNSTDDADRIPF----QEDW 273
A LLH+ Y WD + ++ L V DE + + DA + Q W
Sbjct: 738 ARPLLHEFYEDNSTWDVHQQFLWGPGLLITPVLDEGAEKVMAYVPDAVWYDYETGSQVRW 797
Query: 274 MKMKVKLGSALGGPYLGVHLR 294
K KV++ L G +G+HLR
Sbjct: 798 RKQKVEM--ELPGDKIGLHLR 816
>gi|169209609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 29.3 bits (64), Expect = 7.1
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 325 LDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDG 365
L K+ AT AV + EEL E RF TW +L+K+G
Sbjct: 66 LTKLLEATSAVSAQVEELAFKCTEKARFLKTWR--DLWKEG 104
>gi|169210596 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 29.3 bits (64), Expect = 7.1
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 325 LDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDG 365
L K+ AT AV + EEL E RF TW +L+K+G
Sbjct: 66 LTKLLEATSAVSAQVEELAFKCTEKARFLKTWR--DLWKEG 104
>gi|169210141 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 29.3 bits (64), Expect = 7.1
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 325 LDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDG 365
L K+ AT AV + EEL E RF TW +L+K+G
Sbjct: 66 LTKLLEATSAVSAQVEELAFKCTEKARFLKTWR--DLWKEG 104
>gi|29029601 DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Homo sapiens]
Length = 1157
Score = 29.3 bits (64), Expect = 7.1
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 289 LGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDK-VFVATDAVRKEYEELKKLLP 347
LG HL R+ V S E K R+ KT LD VF+ +V L K LP
Sbjct: 933 LGDHLARR---------VQSEEMLEDKWRNAYKTPLLDDPVFIHPSSV------LFKELP 977
Query: 348 EMVRFEPTWEELELYKDGGVAIIDQWICA 376
E V ++ E ++Y G ++ QWI A
Sbjct: 978 EFVVYQEIVETTKMYMKGVSSVEVQWIPA 1006
>gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [Homo
sapiens]
Length = 1043
Score = 28.9 bits (63), Expect = 9.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 77 EEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIEY 122
EE+ L L P + W +P H RIPW+ LN + + E+
Sbjct: 30 EEFKLCLEPQQLMDFWSAPQGHFPRIPWANLRAADPLNLSFLLDEH 75
>gi|7661844 coiled-coil domain containing 22 [Homo sapiens]
Length = 627
Score = 28.9 bits (63), Expect = 9.2
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 34/185 (18%)
Query: 197 GSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFA--RHLREVGDEFR 254
G+A++ L+ SA+ V+ H G+ W+ R + A RHLR++ D
Sbjct: 396 GTANLAKLQLVVENSAQRVI----------HLAGQ--WEKHRVPLLAEYRHLRKLQD--- 440
Query: 255 SRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVR 314
R L S+ I QE ++ A RRK+ ++ +Q + LE R
Sbjct: 441 CRELESSRRLAEI--QELHQSVRAAAEEA----------RRKEEVY--KQLMSELETLPR 486
Query: 315 KIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDGGVAIIDQWI 374
+ L T R+ ++ +RK+ EE+ K+L + + L D A+ D+ +
Sbjct: 487 DVSRLAYTQRILEI---VGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTFAVTDELV 543
Query: 375 CAHAR 379
A+
Sbjct: 544 FKDAK 548
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,142,178
Number of Sequences: 37866
Number of extensions: 781201
Number of successful extensions: 1711
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1701
Number of HSP's gapped (non-prelim): 16
length of query: 424
length of database: 18,247,518
effective HSP length: 105
effective length of query: 319
effective length of database: 14,271,588
effective search space: 4552636572
effective search space used: 4552636572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.