Search of human proteins with 4757798

Search of human proteins with 4757798

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4757798 APG5 autophagy 5-like [Homo sapiens]
         (275 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4757798 APG5 autophagy 5-like [Homo sapiens]                       579   e-165
gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens]      30   3.0  
gi|31791053 zinc finger protein 804B [Homo sapiens]                    30   3.0  
gi|115527120 nebulin [Homo sapiens]                                    28   6.7  
gi|7656983 TP53-target gene 5 protein [Homo sapiens]                   28   6.7  
gi|53793690 olfactory receptor, family 2, subfamily T, member 6 ...    28   6.7  
gi|219842230 feline sarcoma oncogene isoform 2 [Homo sapiens]          28   8.7  
gi|4503687 feline sarcoma oncogene isoform 1 [Homo sapiens]            28   8.7  
gi|68533232 olfactory receptor, family 2, subfamily W, member 3 ...    28   8.7  

>gi|4757798 APG5 autophagy 5-like [Homo sapiens]
          Length = 275

 Score =  579 bits (1492), Expect = e-165
 Identities = 275/275 (100%), Positives = 275/275 (100%)

Query: 1   MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM 60
           MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM
Sbjct: 1   MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM 60

Query: 61  RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA 120
           RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA
Sbjct: 61  RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA 120

Query: 121 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN 180
           IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN
Sbjct: 121 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN 180

Query: 181 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI 240
           GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI
Sbjct: 181 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI 240

Query: 241 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD 275
           HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD
Sbjct: 241 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD 275


>gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens]
          Length = 2539

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 198  FIQKLFRPVAADGQLHTLGDLLKEVCPS 225
            FI+ +F+P    G+LHTL +LL+ + P+
Sbjct: 2203 FIEGIFQPSYKSGKLHTLENLLESIDPT 2230


>gi|31791053 zinc finger protein 804B [Homo sapiens]
          Length = 1349

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 114 HCPSKDAIEAHFMSCMKE-----ADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQ 164
           H     ++E H   C+K      +D +   SQ+ +E QK+ + +LW   +N+++ +
Sbjct: 743 HKREHHSVERHKRKCLKHNCFYLSDDITKSSQMQSEPQKERNCKLWESFKNEKYSK 798


>gi|115527120 nebulin [Homo sapiens]
          Length = 6669

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 23/132 (17%)

Query: 42   VSYLTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSS------A 95
            + + +L  D    HF +V + +   E    YE +   +H P+ +L  + A  S      A
Sbjct: 1832 IGFRSLEDDPKLVHFMQVAKMQSDREYKKGYEKSKTSFHTPVDMLSVVAAKKSQEVATNA 1891

Query: 96   LPWNITVHFKSFPE-------KDLLHCPSKDAIEAHFMSCMK----------EADALKHK 138
               N+   +   P+       K+++   S +  +A +   MK          EA+  K  
Sbjct: 1892 NYRNVIHTYNMLPDAMSFELAKNMMQIQSDNQYKADYADFMKGIGWLPLGSLEAEKNKKA 1951

Query: 139  SQVINEMQKKDH 150
             ++I+E + + H
Sbjct: 1952 MEIISEKKYRQH 1963


>gi|7656983 TP53-target gene 5 protein [Homo sapiens]
          Length = 290

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 60  MRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPW 98
           M+Q D+++ W  +EG P + H P      ++  SS L W
Sbjct: 199 MKQLDVADQWIWFEGLPTRIHLPAP---RVMCRSSTLRW 234


>gi|53793690 olfactory receptor, family 2, subfamily T, member 6
           [Homo sapiens]
          Length = 308

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 236 NQVMIH--GIEPMLETPLQWLSEHLSYPDNFLHISIIPQ 272
           N VMI    I+P L TP+ +L  HLS  D     +I+P+
Sbjct: 42  NGVMIFLINIDPHLHTPMYFLLSHLSVIDTLYISTIVPK 80


>gi|219842230 feline sarcoma oncogene isoform 2 [Homo sapiens]
          Length = 764

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 116 PSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLW 154
           P+ + +++H     +   +L    Q+I E+QK  H+QLW
Sbjct: 364 PTLEILKSHISGIFRPKFSLPPPLQLIPEVQKPLHEQLW 402


>gi|4503687 feline sarcoma oncogene isoform 1 [Homo sapiens]
          Length = 822

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 116 PSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLW 154
           P+ + +++H     +   +L    Q+I E+QK  H+QLW
Sbjct: 422 PTLEILKSHISGIFRPKFSLPPPLQLIPEVQKPLHEQLW 460


>gi|68533232 olfactory receptor, family 2, subfamily W, member 3
           [Homo sapiens]
          Length = 314

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 238 VMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQ 272
           +++  ++P L TP+ +   HLS+ D     S IPQ
Sbjct: 46  ILVSRLDPHLHTPMYFFLAHLSFLDLSFTTSSIPQ 80


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,181,426
Number of Sequences: 37866
Number of extensions: 498127
Number of successful extensions: 1066
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1057
Number of HSP's gapped (non-prelim): 13
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.