Search of human proteins with 47132622

Search of human proteins with 47132622

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|47132622 5'-methylthioadenosine phosphorylase [Homo sapiens]
         (283 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|47132622 5'-methylthioadenosine phosphorylase [Homo sapiens]       577   e-165
gi|157168362 nucleoside phosphorylase [Homo sapiens]                   72   7e-13
gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]       33   0.37 
gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens]       31   1.4  
gi|53828703 POTE ankyrin domain family, member A isoform 2 [Homo...    30   2.4  
gi|31742508 uridine phosphorylase 1 [Homo sapiens]                     30   2.4  
gi|4507839 uridine phosphorylase 1 [Homo sapiens]                      30   2.4  
gi|116268109 nucleotide-binding oligomerization domains 27 [Homo...    30   3.1  
gi|55743073 ATPase, Cu++ transporting, beta polypeptide isoform ...    28   9.1  

>gi|47132622 5'-methylthioadenosine phosphorylase [Homo sapiens]
          Length = 283

 Score =  577 bits (1487), Expect = e-165
 Identities = 283/283 (100%), Positives = 283/283 (100%)

Query: 1   MASGTTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLAR 60
           MASGTTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLAR
Sbjct: 1   MASGTTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLAR 60

Query: 61  HGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMR 120
           HGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMR
Sbjct: 61  HGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMR 120

Query: 121 PQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSR 180
           PQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSR
Sbjct: 121 PQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSR 180

Query: 181 AESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTL 240
           AESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTL
Sbjct: 181 AESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTL 240

Query: 241 KENANKAKSLLLTTIPQIGSTEWSETLHNLKNMAQFSVLLPRH 283
           KENANKAKSLLLTTIPQIGSTEWSETLHNLKNMAQFSVLLPRH
Sbjct: 241 KENANKAKSLLLTTIPQIGSTEWSETLHNLKNMAQFSVLLPRH 283


>gi|157168362 nucleoside phosphorylase [Homo sapiens]
          Length = 289

 Score = 71.6 bits (174), Expect = 7e-13
 Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 14/221 (6%)

Query: 45  LILGKIKNVDCVLLARHGRQHTIMPS-KVNYQANIWALKEEGCTHVIVTTACGSLREEIQ 103
           L+ G +    CV++      +   P  KV +   ++ L   G   ++VT A G L  + +
Sbjct: 68  LVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLL--GVDTLVVTNAAGGLNPKFE 125

Query: 104 PGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLG-LR 162
            GDI++I   I+      Q+   G +    G     M++ +    R+  + T K++G  R
Sbjct: 126 VGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQR 185

Query: 163 CHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMAT--- 219
              +GT V + GP F + AE  + +  GAD + M+TVPEV++A+  G+     ++ T   
Sbjct: 186 ELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKV 245

Query: 220 --DYDCWKE--HEEAVSVDRVLKTLKENANKAKSLLLTTIP 256
             DY+  ++  HEE ++     K   +   +  S+L+ +IP
Sbjct: 246 IMDYESLEKANHEEVLAAG---KQAAQKLEQFVSILMASIP 283


>gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]
          Length = 965

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 138 IPMAEPFCPKTREVLIETAKKLGLRCHSKGTM-VTIEGPRFSSRAESFMFRTWGADVINM 196
           +P     CPK   V   T +      HSK  +   +  PR + R   F  +TWG D ++ 
Sbjct: 33  VPSLPDVCPKEPTV---TDQHRWTVYHSKVNLPAALNDPRLAKRESDFFTKTWGLDFVDT 89

Query: 197 TTVPEVVL 204
             +P   L
Sbjct: 90  EVIPSFYL 97


>gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens]
          Length = 977

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 164 HSKGTM-VTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVL 204
           HSK  +   +  PR + R   F  +TWG D ++   +P   L
Sbjct: 68  HSKVNLPAALNDPRLAKRESDFFTKTWGLDFVDTEVIPSFYL 109


>gi|53828703 POTE ankyrin domain family, member A isoform 2 [Homo
           sapiens]
          Length = 498

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 56  VLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGS 97
           +LLA HG++  ++   +  +AN+ AL   G T +I+   CGS
Sbjct: 202 LLLAVHGQKQRMVKFLIKKKANLNALDRFGRTALILAVRCGS 243


>gi|31742508 uridine phosphorylase 1 [Homo sapiens]
          Length = 310

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 5   TTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGK 49
           +  T ++IG  GG GL+   ++   TE+ VDT F    + ++LGK
Sbjct: 132 SNVTIIRIGTSGGIGLEPGTVVI--TEQAVDTCFKAEFEQIVLGK 174


>gi|4507839 uridine phosphorylase 1 [Homo sapiens]
          Length = 310

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 5   TTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGK 49
           +  T ++IG  GG GL+   ++   TE+ VDT F    + ++LGK
Sbjct: 132 SNVTIIRIGTSGGIGLEPGTVVI--TEQAVDTCFKAEFEQIVLGK 174


>gi|116268109 nucleotide-binding oligomerization domains 27 [Homo
           sapiens]
          Length = 1866

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 127 GSHSCARGVCHIPMAEPFCPKTREV 151
           GS   ARG+ H+  A P CP+ +EV
Sbjct: 723 GSKITARGISHLVKALPLCPQLKEV 747


>gi|55743073 ATPase, Cu++ transporting, beta polypeptide isoform b
           [Homo sapiens]
          Length = 1258

 Score = 28.1 bits (61), Expect = 9.1
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 201 EVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLT 253
           E  L +  GI YAS+A+AT     K   E +    ++K ++   ++A + L++
Sbjct: 583 ESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIESKTSEALAKLMS 635


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,423,243
Number of Sequences: 37866
Number of extensions: 433663
Number of successful extensions: 851
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 12
length of query: 283
length of database: 18,247,518
effective HSP length: 101
effective length of query: 182
effective length of database: 14,423,052
effective search space: 2624995464
effective search space used: 2624995464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.