Search of human proteins with 45827704

Search of human proteins with 45827704

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|45827704 melanocortin 2 receptor accessory protein isoform
beta [Homo sapiens]
         (102 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|45827704 melanocortin 2 receptor accessory protein isoform be...   206   2e-54
gi|30520312 melanocortin 2 receptor accessory protein isoform al...   140   2e-34
gi|156523251 melanocortin 2 receptor accessory protein 2 [Homo s...    57   4e-09
gi|73760401 thymopoietin isoform gamma [Homo sapiens]                  27   3.5  
gi|73760405 thymopoietin isoform beta [Homo sapiens]                   27   3.5  
gi|4503365 dolichyl-phosphate mannosyltransferase 2 [Homo sapiens]     27   4.5  
gi|38202224 discs large-associated protein 2 [Homo sapiens]            27   4.5  
gi|89242141 colon cancer-associated protein Mic1 [Homo sapiens]        27   4.5  
gi|83367077 mucin 16 [Homo sapiens]                                    26   7.7  

>gi|45827704 melanocortin 2 receptor accessory protein isoform beta
           [Homo sapiens]
          Length = 102

 Score =  206 bits (525), Expect = 2e-54
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MANGTNASAPYYSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVLLFLILLYM 60
           MANGTNASAPYYSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVLLFLILLYM
Sbjct: 1   MANGTNASAPYYSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVLLFLILLYM 60

Query: 61  SWSASPQMSFNTDESLLHSEVLPQTRAISCDELQAPREEGAA 102
           SWSASPQMSFNTDESLLHSEVLPQTRAISCDELQAPREEGAA
Sbjct: 61  SWSASPQMSFNTDESLLHSEVLPQTRAISCDELQAPREEGAA 102


>gi|30520312 melanocortin 2 receptor accessory protein isoform
          alpha [Homo sapiens]
          Length = 172

 Score =  140 bits (353), Expect = 2e-34
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MANGTNASAPYYSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVLLFLILLYM 60
          MANGTNASAPYYSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVLLFLILLYM
Sbjct: 1  MANGTNASAPYYSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVLLFLILLYM 60

Query: 61 SWSASPQM 68
          SWSASPQM
Sbjct: 61 SWSASPQM 68


>gi|156523251 melanocortin 2 receptor accessory protein 2 [Homo
          sapiens]
          Length = 205

 Score = 56.6 bits (135), Expect = 4e-09
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 2/61 (3%)

Query: 6  NASAPYYSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVLLFLILLYMSWSAS 65
          +AS   Y++EY  +Y ++ PV  + LKAHK+SIVI FWV LA FV+ +F +L  ++ + +
Sbjct: 15 SASNSDYTWEY--EYYEIGPVSFEGLKAHKYSIVIGFWVGLAVFVIFMFFVLTLLTKTGA 72

Query: 66 P 66
          P
Sbjct: 73 P 73


>gi|73760401 thymopoietin isoform gamma [Homo sapiens]
          Length = 345

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 12  YSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVL-LFLILLYMSWSASPQMSF 70
           +S +Y   Y+ L  V  +K K  +    I  W+ +  FVV+ +FL L+Y +   +    F
Sbjct: 277 FSSKYVPKYVPLADVKSEKTKKGRS---IPVWIKILLFVVVAVFLFLVYQAMETNQVNPF 333

Query: 71  N 71
           +
Sbjct: 334 S 334


>gi|73760405 thymopoietin isoform beta [Homo sapiens]
          Length = 454

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 12  YSYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVL-LFLILLYMSWSASPQMSF 70
           +S +Y   Y+ L  V  +K K  +    I  W+ +  FVV+ +FL L+Y +   +    F
Sbjct: 386 FSSKYVPKYVPLADVKSEKTKKGRS---IPVWIKILLFVVVAVFLFLVYQAMETNQVNPF 442

Query: 71  N 71
           +
Sbjct: 443 S 443


>gi|4503365 dolichyl-phosphate mannosyltransferase 2 [Homo
          sapiens]
          Length = 84

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 14 YEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVS--LAAFVVLLFLILLYMSW 62
          + YY  ++ L+P  + +   HK+ +  A+ V+  LAA ++LL  + L++S+
Sbjct: 21 FTYYTAWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLLLLLFVGLFISY 71


>gi|38202224 discs large-associated protein 2 [Homo sapiens]
          Length = 975

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 69  SFNTDESLLHSEVLPQTRAISCDELQAPREE 99
           S N D+ LLH +  P  R   C  LQ P++E
Sbjct: 307 SLNLDKPLLHQDAKPALR--PCHYLQVPQDE 335


>gi|89242141 colon cancer-associated protein Mic1 [Homo sapiens]
          Length = 657

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 57  LLYMSWSASPQMSFNTDESLLHSEVLPQTRAI 88
           +L   W++S ++ F TD+ +   +VLP+ R++
Sbjct: 113 ILGFCWTSSTEIVFITDQGIEFYQVLPEKRSL 144


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 63   SASPQMSFNTDESLLHSEVLPQTRAISCDELQAPREEG 100
            ++ P M+  +DESL  S+   +T AI   E  A  + G
Sbjct: 8907 TSPPSMNITSDESLATSKATMETEAIQLSENTAVTQMG 8944


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,940,914
Number of Sequences: 37866
Number of extensions: 136581
Number of successful extensions: 391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 11
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.