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Search of human proteins with 13236587
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13236587 transmembrane protein 43 [Homo sapiens]
(400 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13236587 transmembrane protein 43 [Homo sapiens] 798 0.0
gi|208610019 hypothetical protein LOC114926 [Homo sapiens] 32 1.0
gi|208610017 hypothetical protein LOC114926 [Homo sapiens] 32 1.0
gi|208610015 hypothetical protein LOC114926 [Homo sapiens] 32 1.0
gi|208610013 hypothetical protein LOC114926 [Homo sapiens] 32 1.0
gi|194328680 myeloid leukemia factor 1 isoform 2 [Homo sapiens] 30 5.0
gi|194328678 myeloid leukemia factor 1 isoform 2 [Homo sapiens] 30 5.0
gi|11967975 myeloid leukemia factor 1 isoform 1 [Homo sapiens] 30 5.0
gi|33946313 ninein isoform 4 [Homo sapiens] 30 5.0
gi|33946321 ninein isoform 5 [Homo sapiens] 30 5.0
gi|148536871 ninein isoform 1 [Homo sapiens] 30 5.0
gi|148536869 ninein isoform 2 [Homo sapiens] 30 5.0
gi|122056683 FRAS1 related extracellular matrix 1 [Homo sapiens] 29 8.6
>gi|13236587 transmembrane protein 43 [Homo sapiens]
Length = 400
Score = 798 bits (2060), Expect = 0.0
Identities = 400/400 (100%), Positives = 400/400 (100%)
Query: 1 MAANYSSTSTRREHVKVKTSSQPGFLERLSETSGGMFVGLMAFLLSFYLIFTNEGRALKT 60
MAANYSSTSTRREHVKVKTSSQPGFLERLSETSGGMFVGLMAFLLSFYLIFTNEGRALKT
Sbjct: 1 MAANYSSTSTRREHVKVKTSSQPGFLERLSETSGGMFVGLMAFLLSFYLIFTNEGRALKT 60
Query: 61 ATSLAEGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVE 120
ATSLAEGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVE
Sbjct: 61 ATSLAEGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVE 120
Query: 121 MYQWVETEESREYTEDGQVKKETRYSYNTEWRSEIINSKNFDREIGHKNPSAMAVESFMA 180
MYQWVETEESREYTEDGQVKKETRYSYNTEWRSEIINSKNFDREIGHKNPSAMAVESFMA
Sbjct: 121 MYQWVETEESREYTEDGQVKKETRYSYNTEWRSEIINSKNFDREIGHKNPSAMAVESFMA 180
Query: 181 TAPFVQIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPEVGDLR 240
TAPFVQIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPEVGDLR
Sbjct: 181 TAPFVQIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPEVGDLR 240
Query: 241 VSFSYAGLSGDDPDLGPAHVVTVIARQRGDQLVPFSTKSGDTLLLLHHGDFSAEEVFHRE 300
VSFSYAGLSGDDPDLGPAHVVTVIARQRGDQLVPFSTKSGDTLLLLHHGDFSAEEVFHRE
Sbjct: 241 VSFSYAGLSGDDPDLGPAHVVTVIARQRGDQLVPFSTKSGDTLLLLHHGDFSAEEVFHRE 300
Query: 301 LRSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLT 360
LRSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLT
Sbjct: 301 LRSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLT 360
Query: 361 LLTVAAGWLFYRPLWALLIAGLALVPILVARTRVPAKKLE 400
LLTVAAGWLFYRPLWALLIAGLALVPILVARTRVPAKKLE
Sbjct: 361 LLTVAAGWLFYRPLWALLIAGLALVPILVARTRVPAKKLE 400
>gi|208610019 hypothetical protein LOC114926 [Homo sapiens]
Length = 107
Score = 32.0 bits (71), Expect = 1.0
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 81 APENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMY 122
A N+ R++ I T + LS+PN+ + ++LR+ +EMY
Sbjct: 43 AKRNKRRIMRIFSVPPTEETLSEPNFYDTISKIRLRQQLEMY 84
>gi|208610017 hypothetical protein LOC114926 [Homo sapiens]
Length = 107
Score = 32.0 bits (71), Expect = 1.0
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 81 APENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMY 122
A N+ R++ I T + LS+PN+ + ++LR+ +EMY
Sbjct: 43 AKRNKRRIMRIFSVPPTEETLSEPNFYDTISKIRLRQQLEMY 84
>gi|208610015 hypothetical protein LOC114926 [Homo sapiens]
Length = 107
Score = 32.0 bits (71), Expect = 1.0
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 81 APENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMY 122
A N+ R++ I T + LS+PN+ + ++LR+ +EMY
Sbjct: 43 AKRNKRRIMRIFSVPPTEETLSEPNFYDTISKIRLRQQLEMY 84
>gi|208610013 hypothetical protein LOC114926 [Homo sapiens]
Length = 107
Score = 32.0 bits (71), Expect = 1.0
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 81 APENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMY 122
A N+ R++ I T + LS+PN+ + ++LR+ +EMY
Sbjct: 43 AKRNKRRIMRIFSVPPTEETLSEPNFYDTISKIRLRQQLEMY 84
>gi|194328680 myeloid leukemia factor 1 isoform 2 [Homo sapiens]
Length = 243
Score = 29.6 bits (65), Expect = 5.0
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 93 GALRTSKLLSDPNYGVHLPAVKLRRHVEMYQWVETEESREYTEDGQVKKE-------TRY 145
G T K + D + G+ A+ H+ V + + T D +V +E +
Sbjct: 111 GIKETRKAMRDSDSGLEKMAIG--HHIHDRAHVIKKSKNKKTGDEEVNQEFINMNESDAH 168
Query: 146 SYNTEWRSEIINSK--------NFDREIGHKNPSA 172
+++ EW+SE++ K R +GH+NP +
Sbjct: 169 AFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGS 203
>gi|194328678 myeloid leukemia factor 1 isoform 2 [Homo sapiens]
Length = 243
Score = 29.6 bits (65), Expect = 5.0
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 93 GALRTSKLLSDPNYGVHLPAVKLRRHVEMYQWVETEESREYTEDGQVKKE-------TRY 145
G T K + D + G+ A+ H+ V + + T D +V +E +
Sbjct: 111 GIKETRKAMRDSDSGLEKMAIG--HHIHDRAHVIKKSKNKKTGDEEVNQEFINMNESDAH 168
Query: 146 SYNTEWRSEIINSK--------NFDREIGHKNPSA 172
+++ EW+SE++ K R +GH+NP +
Sbjct: 169 AFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGS 203
>gi|11967975 myeloid leukemia factor 1 isoform 1 [Homo sapiens]
Length = 268
Score = 29.6 bits (65), Expect = 5.0
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 93 GALRTSKLLSDPNYGVHLPAVKLRRHVEMYQWVETEESREYTEDGQVKKE-------TRY 145
G T K + D + G+ A+ H+ V + + T D +V +E +
Sbjct: 136 GIKETRKAMRDSDSGLEKMAIG--HHIHDRAHVIKKSKNKKTGDEEVNQEFINMNESDAH 193
Query: 146 SYNTEWRSEIINSK--------NFDREIGHKNPSA 172
+++ EW+SE++ K R +GH+NP +
Sbjct: 194 AFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGS 228
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 29.6 bits (65), Expect = 5.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 197 IDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPE 235
+DK + KSL S+++D H I RR ++ + +Y E
Sbjct: 396 LDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKE 434
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 29.6 bits (65), Expect = 5.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 197 IDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPE 235
+DK + KSL S+++D H I RR ++ + +Y E
Sbjct: 390 LDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKE 428
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 29.6 bits (65), Expect = 5.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 197 IDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPE 235
+DK + KSL S+++D H I RR ++ + +Y E
Sbjct: 390 LDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKE 428
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 29.6 bits (65), Expect = 5.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 197 IDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPE 235
+DK + KSL S+++D H I RR ++ + +Y E
Sbjct: 390 LDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKE 428
>gi|122056683 FRAS1 related extracellular matrix 1 [Homo sapiens]
Length = 2179
Score = 28.9 bits (63), Expect = 8.6
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 139 VKKETRYSYNTEWRSEIINSKNFDREIGHKNPSAMAVESFMATAPFVQIGRFFLSSGLID 198
V KET +Y T+ + I+S+++DRE+ + + T PF L +G +
Sbjct: 652 VVKETEVAYITKKQLHFIDSESYDRELVYT----------ITTPPFFSFSHRHLDAGKLF 701
Query: 199 KVDN 202
VD+
Sbjct: 702 MVDS 705
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,926,872
Number of Sequences: 37866
Number of extensions: 575628
Number of successful extensions: 1196
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 13
length of query: 400
length of database: 18,247,518
effective HSP length: 104
effective length of query: 296
effective length of database: 14,309,454
effective search space: 4235598384
effective search space used: 4235598384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.