Guide to the Human Genome
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Name: ALG12 Sequence: fasta or formatted (488aa) NCBI GI: 13129114
Description:

alpha-1,6-mannosyltransferase ALG12

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         43           3
 C cysteine            1.4          7           1
 D aspartate           2.0         10           1
 E glutamate           2.7         13           2
 F phenylalanine       4.7         23           1
 G glycine             6.6         32           2
 H histidine           3.5         17           1
 I isoleucine          3.1         15           2
 K lysine              2.7         13           2
 L leucine            17.6         86           5
 M methionine          2.3         11           1
 N asparagine          2.9         14           2
 P proline             5.1         25           2
 Q glutamine           3.1         15           1
 R arginine            5.5         27           2
 S serine              5.5         27           2
 T threonine           5.3         26           2
 V valine             10.2         50           2
 W tryptophan          2.7         13           1
 Y tyrosine            4.3         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha-1,6-mannosyltransferase ALG12 
PIGB                  0.057   phosphatidylinositol glycan, class B 
ALG9                  0.032   asparagine-linked glycosylation 9 protein isoform a...
ALG9                  0.032   asparagine-linked glycosylation 9 protein isoform b...
ALG9                  0.020   asparagine-linked glycosylation 9 protein isoform c...
ALG9                  0.019   asparagine-linked glycosylation 9 protein isoform d...
UTP20                 0.005   down-regulated in metastasis 
LOC653877             0.005   PREDICTED: similar to Temporarily Assigned Gene name...
SILV                  0.005   silver homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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