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Search of human proteins with 45333906
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45333906 COMM domain containing 6 isoform b [Homo sapiens]
(85 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45333906 COMM domain containing 6 isoform b [Homo sapiens] 173 2e-44
gi|45333909 COMM domain containing 6 isoform a [Homo sapiens] 164 1e-41
gi|8923458 COMM domain containing 8 [Homo sapiens] 41 2e-04
gi|151101369 COMM domain containing 7 isoform 1 [Homo sapiens] 39 0.001
gi|151101367 COMM domain containing 7 isoform 2 [Homo sapiens] 39 0.001
gi|124487382 COMM domain containing 5 [Homo sapiens] 28 1.2
gi|154800418 COMM domain containing 5 [Homo sapiens] 28 1.2
gi|19923430 COMM domain containing 5 [Homo sapiens] 28 1.2
gi|169166962 PREDICTED: similar to COMM domain containing 5 [Hom... 27 3.5
gi|169166771 PREDICTED: similar to COMM domain containing 5 [Hom... 27 3.5
gi|169166418 PREDICTED: similar to COMM domain containing 5 [Hom... 27 3.5
gi|9994185 RNA binding motif protein 7 [Homo sapiens] 27 4.5
gi|21361661 COMM domain containing 4 [Homo sapiens] 27 4.5
gi|170784846 kelch-like 7 isoform 1 [Homo sapiens] 26 5.9
gi|170784844 kelch-like 7 isoform 2 [Homo sapiens] 26 5.9
gi|4758416 golgi-specific brefeldin A resistant guanine nucleoti... 26 7.7
gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens] 26 7.7
gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens] 26 7.7
>gi|45333906 COMM domain containing 6 isoform b [Homo sapiens]
Length = 85
Score = 173 bits (439), Expect = 2e-44
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MEASSEPPLDAKSDVTNQLVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKC 60
MEASSEPPLDAKSDVTNQLVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKC
Sbjct: 1 MEASSEPPLDAKSDVTNQLVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKC 60
Query: 61 FEMTIPQFQNFYRQFKEIAAVIETV 85
FEMTIPQFQNFYRQFKEIAAVIETV
Sbjct: 61 FEMTIPQFQNFYRQFKEIAAVIETV 85
>gi|45333909 COMM domain containing 6 isoform a [Homo sapiens]
Length = 98
Score = 164 bits (415), Expect = 1e-41
Identities = 85/98 (86%), Positives = 85/98 (86%), Gaps = 13/98 (13%)
Query: 1 MEASSEPPLDAKSDVTNQLVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKC 60
MEASSEPPLDAKSDVTNQLVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKC
Sbjct: 1 MEASSEPPLDAKSDVTNQLVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKC 60
Query: 61 FEMTIPQFQ-------------NFYRQFKEIAAVIETV 85
FEMTIPQFQ NFYRQFKEIAAVIETV
Sbjct: 61 FEMTIPQFQPQLLATSSLLSASNFYRQFKEIAAVIETV 98
>gi|8923458 COMM domain containing 8 [Homo sapiens]
Length = 183
Score = 40.8 bits (94), Expect = 2e-04
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 18 QLVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQNFYRQFKE 77
QL DF W++ +A+SSD +L+ P +++ L V + +G+VK EM+ + QN + +
Sbjct: 116 QLQDFDWQVKLALSSDKIAALRMPLLSLHLDVKE-NGEVKPYSIEMSREELQNLIQSLEA 174
Query: 78 IAAVI 82
V+
Sbjct: 175 ANKVV 179
>gi|151101369 COMM domain containing 7 isoform 1 [Homo sapiens]
Length = 200
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 17 NQLVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQNFYRQFK 76
NQL+D +WK G+ S + ++ + L V Q + E+T+PQF +F + +
Sbjct: 132 NQLIDMEWKFGVTSGSSELEKVGSIFLQLKL-VVKKGNQTENVYIELTLPQFYSFLHEME 190
Query: 77 EIAAVIE 83
+ +E
Sbjct: 191 RVRTSME 197
>gi|151101367 COMM domain containing 7 isoform 2 [Homo sapiens]
Length = 199
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 17 NQLVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQNFYRQFK 76
NQL+D +WK G+ S + ++ + L V Q + E+T+PQF +F + +
Sbjct: 131 NQLIDMEWKFGVTSGSSELEKVGSIFLQLKL-VVKKGNQTENVYIELTLPQFYSFLHEME 189
Query: 77 EIAAVIE 83
+ +E
Sbjct: 190 RVRTSME 196
>gi|124487382 COMM domain containing 5 [Homo sapiens]
Length = 224
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 19 LVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQ 69
+ DF+W++ +A+S+ P V + LK++D S FE+ +FQ
Sbjct: 152 VADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAY----RFEVPTAKFQ 198
>gi|154800418 COMM domain containing 5 [Homo sapiens]
Length = 224
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 19 LVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQ 69
+ DF+W++ +A+S+ P V + LK++D S FE+ +FQ
Sbjct: 152 VADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAY----RFEVPTAKFQ 198
>gi|19923430 COMM domain containing 5 [Homo sapiens]
Length = 224
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 19 LVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQ 69
+ DF+W++ +A+S+ P V + LK++D S FE+ +FQ
Sbjct: 152 VADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAY----RFEVPTAKFQ 198
>gi|169166962 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 19 LVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQ 69
+ DFQW + + +S+ P V + LK++D FE+ I +FQ
Sbjct: 201 VADFQWWVDVTISTSALARFLQPRVLMQLKLSDGLAY----RFEVPIAKFQ 247
>gi|169166771 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 19 LVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQ 69
+ DFQW + + +S+ P V + LK++D FE+ I +FQ
Sbjct: 201 VADFQWWVDVTISTSALARFLQPRVLMQLKLSDGLAY----RFEVPIAKFQ 247
>gi|169166418 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 19 LVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQ 69
+ DFQW + + +S+ P V + LK++D FE+ I +FQ
Sbjct: 201 VADFQWWVDVTISTSALARFLQPRVLMQLKLSDGLAY----RFEVPIAKFQ 247
>gi|9994185 RNA binding motif protein 7 [Homo sapiens]
Length = 266
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 2 EASSEPPLDAKSDVTNQLVDFQWKLGMAVSSDTCRSLKYPYVA 44
++ P + + S NQ QW+ G S R YPY+A
Sbjct: 167 QSGFSPSVQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLA 209
>gi|21361661 COMM domain containing 4 [Homo sapiens]
Length = 199
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 17 NQLVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSG-QVKTKCFEMTIPQFQNFYRQF 75
N+L W++ +SS +S++ P V + L+VA G + ++ +FQ +
Sbjct: 129 NRLAGVGWRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADKFQVLLAEL 188
Query: 76 KEIAAVIETV 85
K+ ++ ++
Sbjct: 189 KQAQTLMSSL 198
>gi|170784846 kelch-like 7 isoform 1 [Homo sapiens]
Length = 586
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 10 DAKSDVTNQLVDFQWKLGMAVSSDTCRSL 38
DA+ D+ QLV+F + ++V+S+ +SL
Sbjct: 89 DAEPDIIEQLVEFAYTARISVNSNNVQSL 117
>gi|170784844 kelch-like 7 isoform 2 [Homo sapiens]
Length = 564
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 10 DAKSDVTNQLVDFQWKLGMAVSSDTCRSL 38
DA+ D+ QLV+F + ++V+S+ +SL
Sbjct: 67 DAEPDIIEQLVEFAYTARISVNSNNVQSL 95
>gi|4758416 golgi-specific brefeldin A resistant guanine nucleotide
exchange factor 1 [Homo sapiens]
Length = 1859
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 31 SSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQ 69
+SD C SL Y +ML H+ V+ + MT+ +F+
Sbjct: 819 NSDACFSLAY--AVIMLNTDQHNHNVRKQNAPMTLEEFR 855
>gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens]
Length = 156
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 18 QLVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVAD 51
+LVD W++ + SSD+ + P + +K+ +
Sbjct: 80 RLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 113
>gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens]
Length = 198
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 18 QLVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVAD 51
+LVD W++ + SSD+ + P + +K+ +
Sbjct: 122 RLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.130 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,714,506
Number of Sequences: 37866
Number of extensions: 80088
Number of successful extensions: 142
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 18
length of query: 85
length of database: 18,247,518
effective HSP length: 57
effective length of query: 28
effective length of database: 16,089,156
effective search space: 450496368
effective search space used: 450496368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.