Search of human proteins with 4507217

Search of human proteins with 4507217

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507217 signal recognition particle 9kDa isoform 2 [Homo
sapiens]
         (86 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169201709 PREDICTED: signal recognition particle 9-like 1 [Ho...   176   5e-45
gi|4507217 signal recognition particle 9kDa isoform 2 [Homo sapi...   176   5e-45
gi|194363758 signal recognition particle 9kDa isoform 1 [Homo sa...   100   2e-22
gi|149944526 additional sex combs like 3 [Homo sapiens]                27   4.5  
gi|20149594 heat shock 90kDa protein 1, beta [Homo sapiens]            26   5.9  
gi|209969800 RPE-spondin [Homo sapiens]                                26   5.9  

>gi|169201709 PREDICTED: signal recognition particle 9-like 1
          [Homo sapiens]
          Length = 86

 Score =  176 bits (445), Expect = 5e-45
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK 60
          MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK
Sbjct: 1  MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK 60

Query: 61 KIEKFHSQLMRLMVAKEARNVTMETE 86
          KIEKFHSQLMRLMVAKEARNVTMETE
Sbjct: 61 KIEKFHSQLMRLMVAKEARNVTMETE 86


>gi|4507217 signal recognition particle 9kDa isoform 2 [Homo
          sapiens]
          Length = 86

 Score =  176 bits (445), Expect = 5e-45
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK 60
          MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK
Sbjct: 1  MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK 60

Query: 61 KIEKFHSQLMRLMVAKEARNVTMETE 86
          KIEKFHSQLMRLMVAKEARNVTMETE
Sbjct: 61 KIEKFHSQLMRLMVAKEARNVTMETE 86


>gi|194363758 signal recognition particle 9kDa isoform 1 [Homo
          sapiens]
          Length = 82

 Score =  100 bits (249), Expect = 2e-22
 Identities = 47/47 (100%), Positives = 47/47 (100%)

Query: 1  MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLV 47
          MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLV
Sbjct: 1  MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLV 47


>gi|149944526 additional sex combs like 3 [Homo sapiens]
          Length = 2248

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 5  QTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCL 49
          +TW E +R A + +   PM A+ +L+    +G      T  L CL
Sbjct: 10 RTWAEAARLALEKHPNSPMTAKQILEVIQKEGLKETSGTSPLACL 54


>gi|20149594 heat shock 90kDa protein 1, beta [Homo sapiens]
          Length = 724

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 12  RAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIE----KFHS 67
           R  E +Y+ +P+    V + +  DG   V VT + + L    +  ++ KK+E    KF +
Sbjct: 506 RGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLEL---PEDEEEKKKMEESKAKFEN 562

Query: 68  --QLMRLMVAKEARNVTM 83
             +LM+ ++ K+   VT+
Sbjct: 563 LCKLMKEILDKKVEKVTI 580


>gi|209969800 RPE-spondin [Homo sapiens]
          Length = 264

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQD 58
           W  +S  A++      ++ R V +   + G  C  + +   CL Y T Q QD
Sbjct: 80  WSPWSGCADQCKPTTRVRRRSVQQEPQNGGAPCPPLEERAGCLEYSTPQGQD 131


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,767,269
Number of Sequences: 37866
Number of extensions: 85758
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 18,247,518
effective HSP length: 58
effective length of query: 28
effective length of database: 16,051,290
effective search space: 449436120
effective search space used: 449436120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.