Search of human proteins with 4506681

Search of human proteins with 4506681

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506681 ribosomal protein S11 [Homo sapiens]
         (158 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506681 ribosomal protein S11 [Homo sapiens]                       322   1e-88
gi|239756605 PREDICTED: similar to ribosomal protein S11 [Homo s...    99   2e-21
gi|22749377 DnaJ (Hsp40) homolog, subfamily C, member 18 [Homo s...    27   5.6  
gi|21361837 chromosome 1 open reading frame 128 [Homo sapiens]         27   5.6  
gi|163644283 proteasome (prosome, macropain) activator subunit 4...    27   5.6  
gi|4507021 solute carrier family 4, anion exchanger, member 1 [H...    27   7.3  
gi|55769520 inositol hexaphosphate kinase 2 isoform a [Homo sapi...    27   9.5  
gi|56237025 inositol hexaphosphate kinase 2 isoform a [Homo sapi...    27   9.5  

>gi|4506681 ribosomal protein S11 [Homo sapiens]
          Length = 158

 Score =  322 bits (824), Expect = 1e-88
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
           MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
           PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158
           QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158


>gi|239756605 PREDICTED: similar to ribosomal protein S11 [Homo
           sapiens]
          Length = 67

 Score = 98.6 bits (244), Expect = 2e-21
 Identities = 48/53 (90%), Positives = 50/53 (94%)

Query: 106 HKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158
           +KNMS+HLS  FRDVQIG IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 15  YKNMSIHLSTFFRDVQIGHIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 67


>gi|22749377 DnaJ (Hsp40) homolog, subfamily C, member 18 [Homo
           sapiens]
          Length = 358

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 88  IRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQI---GDIVTVGECRPLSKTV 138
           I +DY+ YI+     EK+ K+   +L+  +RD ++    + + +  C  LSK +
Sbjct: 299 IEKDYIDYIQTSCWKEKQQKSELTNLAGLYRDERLKQKAESLKLENCEKLSKLI 352


>gi|21361837 chromosome 1 open reading frame 128 [Homo sapiens]
          Length = 211

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 25/81 (30%)

Query: 61  PFTGNVSIRGRILSGV---------------------VTKMKMQRTIVIRRDY---LHYI 96
           PFTGNV ++G I+ G                       T+ +  +T  + RD    L Y 
Sbjct: 81  PFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDTEREPDQTFSLNRDLTGELEYA 140

Query: 97  RKYNRFEKRHKNMSVHLSPCF 117
            K +RF   + ++S+H+S  F
Sbjct: 141 TKISRFSNVY-HLSIHISKNF 160


>gi|163644283 proteasome (prosome, macropain) activator subunit 4
            [Homo sapiens]
          Length = 1843

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 31   EKLPRYYKNIGLGFKTPKEAIE 52
            EK+ R Y+ IGL F  PK  +E
Sbjct: 1081 EKIHRQYETIGLDFTIPKSCVE 1102


>gi|4507021 solute carrier family 4, anion exchanger, member 1 [Homo
           sapiens]
          Length = 911

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 42  LGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYL-HYIRKYN 100
           +GF  P    E  +    C   G   I GR+  G    + +   +     +L  +I +Y 
Sbjct: 462 VGFSGPLLVFEEAFFSF-CETNGLEYIVGRVWIGFWLILLVVLVVAFEGSFLVRFISRYT 520

Query: 101 RFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAG 150
           +     +  S  +S  F       ++ + +  PL KT  +NVL V K  G
Sbjct: 521 Q-----EIFSFLISLIFIYETFSKLIKIFQDHPLQKTYNYNVLMVPKPQG 565


>gi|55769520 inositol hexaphosphate kinase 2 isoform a [Homo
           sapiens]
          Length = 426

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 101 RFEK-RHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKK 153
           RFE+   +N+ +   P   D  I DIV   +C P SK +R+   K      T+K
Sbjct: 73  RFEEDEDRNLCLIAYPLKGDHGIVDIVDNSDCEPKSKLLRWTTNKKHHVLETEK 126


>gi|56237025 inositol hexaphosphate kinase 2 isoform a [Homo
           sapiens]
          Length = 426

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 101 RFEK-RHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKK 153
           RFE+   +N+ +   P   D  I DIV   +C P SK +R+   K      T+K
Sbjct: 73  RFEEDEDRNLCLIAYPLKGDHGIVDIVDNSDCEPKSKLLRWTTNKKHHVLETEK 126


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,355,778
Number of Sequences: 37866
Number of extensions: 208932
Number of successful extensions: 343
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 8
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.