Search of human proteins with 4506663

Search of human proteins with 4506663

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506663 ribosomal protein L8 [Homo sapiens]
         (257 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506663 ribosomal protein L8 [Homo sapiens]                        524   e-149
gi|15431306 ribosomal protein L8 [Homo sapiens]                       524   e-149
gi|21265070 mitochondrial ribosomal protein L2 [Homo sapiens]          45   6e-05
gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]                    29   3.5  
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]                    29   3.5  
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]                    29   3.5  
gi|221219000 phospholipase C-like 2 isoform 1 [Homo sapiens]           29   4.6  

>gi|4506663 ribosomal protein L8 [Homo sapiens]
          Length = 257

 Score =  524 bits (1350), Expect = e-149
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
           MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120
           VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120

Query: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180
           GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180

Query: 181 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
           KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240

Query: 241 RRTGRLRGTKTVQEKEN 257
           RRTGRLRGTKTVQEKEN
Sbjct: 241 RRTGRLRGTKTVQEKEN 257


>gi|15431306 ribosomal protein L8 [Homo sapiens]
          Length = 257

 Score =  524 bits (1350), Expect = e-149
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
           MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120
           VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120

Query: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180
           GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180

Query: 181 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
           KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240

Query: 241 RRTGRLRGTKTVQEKEN 257
           RRTGRLRGTKTVQEKEN
Sbjct: 241 RRTGRLRGTKTVQEKEN 257


>gi|21265070 mitochondrial ribosomal protein L2 [Homo sapiens]
          Length = 305

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 17/167 (10%)

Query: 28  RLRAVDFAE------RHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
           R R +DF        + G  +  V  + +DP R A +A V      R+   TE   A + 
Sbjct: 103 RYRMIDFLRFRPEETKSGPFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDT 162

Query: 82  I----HTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVI 137
           I    H G+     ++     G+  P+G +P GT++  +E +PG   +  RA+G    ++
Sbjct: 163 ILNSNHIGRMAVAARE-----GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLL 217

Query: 138 SHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGR 184
                T    ++LPS  +  +     A VG V+      + I KAGR
Sbjct: 218 RKVNGT--AIIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAGR 262


>gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]
          Length = 3874

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 4    VIRGQRKGAGSVFRAHVKHRK-GAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVV 62
            V+RG+ +G+       +  RK G A L      E H  +  I   I H P    PL +V+
Sbjct: 3203 VVRGEPQGSWGSMTGVINGRKFGVATLNTSVMQEAHSGVSSIHSSIRHVPANVGPLMRVL 3262


>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
          Length = 5065

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 4    VIRGQRKGAGSVFRAHVKHRK-GAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVV 62
            V+RG+ +G+       +  RK G A L      E H  +  I   I H P    PL +V+
Sbjct: 4394 VVRGEPQGSWGSMTGVINGRKFGVATLNTSVMQEAHSGVSSIHSSIRHVPANVGPLMRVL 4453


>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
          Length = 3783

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 4    VIRGQRKGAGSVFRAHVKHRK-GAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVV 62
            V+RG+ +G+       +  RK G A L      E H  +  I   I H P    PL +V+
Sbjct: 3112 VVRGEPQGSWGSMTGVINGRKFGVATLNTSVMQEAHSGVSSIHSSIRHVPANVGPLMRVL 3171


>gi|221219000 phospholipase C-like 2 isoform 1 [Homo sapiens]
          Length = 1127

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 104 VGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANR 163
           V   P  + V C   +    G L R S           E KKT       ++K ISSA+ 
Sbjct: 79  VALAPTPSAVVCTLPRESKPGGLPRRSSIIKDGTKQKRERKKTVSFSSMPTEKKISSASD 138

Query: 164 AVVGVVAGGGRIDKPILKAGRAYHKY 189
            +  +V G     K +    R YH+Y
Sbjct: 139 CINSMVEGSEL--KKVRSNSRIYHRY 162


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,289,984
Number of Sequences: 37866
Number of extensions: 493944
Number of successful extensions: 924
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 10
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.