Search of human proteins with 4506607

Search of human proteins with 4506607

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506607 ribosomal protein L18 [Homo sapiens]
         (188 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506607 ribosomal protein L18 [Homo sapiens]                       375   e-104
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...    35   0.029
gi|239757486 PREDICTED: hypothetical protein [Homo sapiens]            33   0.14 
gi|239752001 PREDICTED: hypothetical protein XP_002348063 [Homo ...    33   0.14 
gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo ...    33   0.19 
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap...    29   2.7  
gi|117938328 l(3)mbt-like isoform I [Homo sapiens]                     29   2.7  
gi|117938330 l(3)mbt-like isoform II [Homo sapiens]                    29   2.7  
gi|199559954 coiled-coil domain containing 78 [Homo sapiens]           27   7.9  

>gi|4506607 ribosomal protein L18 [Homo sapiens]
          Length = 188

 Score =  375 bits (962), Expect = e-104
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
           MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 61  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
           LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI
Sbjct: 61  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120

Query: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 180
           LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 180

Query: 181 RASRGYKN 188
           RASRGYKN
Sbjct: 181 RASRGYKN 188


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
           sapiens]
          Length = 1792

 Score = 35.4 bits (80), Expect = 0.029
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 8/131 (6%)

Query: 56  TNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILR 115
           T  PPLS     R+ +    E K    +   T+D   + +   K+   R  S +RS+   
Sbjct: 631 TQAPPLSREEFYREQRRLKEEEKKKSKLDEFTNDFAKELMEYKKIQKERRRSFSRSKSPY 690

Query: 116 AGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175
           +G    ++ + +    K       SG  + R   R F ++    +S + PY R    K  
Sbjct: 691 SGS---SYSRSSYTYSKS-----RSGSTRSRSYSRSFSRSHSRSYSRSPPYPRRGRGKSR 742

Query: 176 RARGRRASRGY 186
             R R  S GY
Sbjct: 743 NYRSRSRSHGY 753


>gi|239757486 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 271

 Score = 33.1 bits (74), Expect = 0.14
 Identities = 30/117 (25%), Positives = 42/117 (35%)

Query: 44  NQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCAL 103
           NQ  L  L      +P L  +R +   K PG  ++ A+         R  +V +      
Sbjct: 26  NQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPS 85

Query: 104 RVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPH 160
           R T   R    R GG       L+  + KG   + +S PR       H GK   T H
Sbjct: 86  RGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLPVSFPRTRESWGAHSGKEDETLH 142


>gi|239752001 PREDICTED: hypothetical protein XP_002348063 [Homo
           sapiens]
          Length = 271

 Score = 33.1 bits (74), Expect = 0.14
 Identities = 30/117 (25%), Positives = 42/117 (35%)

Query: 44  NQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCAL 103
           NQ  L  L      +P L  +R +   K PG  ++ A+         R  +V +      
Sbjct: 26  NQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPS 85

Query: 104 RVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPH 160
           R T   R    R GG       L+  + KG   + +S PR       H GK   T H
Sbjct: 86  RGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLPVSFPRTRESWGAHSGKEDETLH 142


>gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo
           sapiens]
          Length = 271

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 30/117 (25%), Positives = 42/117 (35%)

Query: 44  NQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCAL 103
           NQ  L  L      +P L  +R +   K PG  ++ A+         R  +V +      
Sbjct: 26  NQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPS 85

Query: 104 RVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPH 160
           R T   R    R GG      +L+  + KG     +S PR       H GK   T H
Sbjct: 86  RGTKPPRRVAARTGGLTTARGRLSTAAAKGATHPPVSFPRTRESWGAHSGKEDETLH 142


>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo
           sapiens]
          Length = 1758

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 140 SGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGY 186
           SG  + R   R F ++    +S + PY R    K    R R  S GY
Sbjct: 673 SGSTRSRSYSRSFSRSHSRSYSRSPPYPRRGRGKSRNYRSRSRSHGY 719


>gi|117938328 l(3)mbt-like isoform I [Homo sapiens]
          Length = 772

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 41  STFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDV 90
           ST  Q   K LF+S+++ PP    ++  K++   R N + V V ++TD V
Sbjct: 322 STRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVV 371


>gi|117938330 l(3)mbt-like isoform II [Homo sapiens]
          Length = 738

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 41  STFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDV 90
           ST  Q   K LF+S+++ PP    ++  K++   R N + V V ++TD V
Sbjct: 322 STRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVV 371


>gi|199559954 coiled-coil domain containing 78 [Homo sapiens]
          Length = 438

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 110 RSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGR---EVYRHFGKAPGTPHSH 162
           +S ILR   ++L  +     + +GC   + S PR  R   +  RH  + PG    H
Sbjct: 87  KSEILRLESRVLELELRGDGTSQGCAVPVESDPRHPRAAAQELRHKAQVPGHSDDH 142


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,968,909
Number of Sequences: 37866
Number of extensions: 291609
Number of successful extensions: 671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 9
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.