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Search of human proteins with 4505621
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505621 prostatic binding protein [Homo sapiens]
(187 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505621 prostatic binding protein [Homo sapiens] 396 e-111
gi|169636418 mitochondrial ribosomal protein L38 [Homo sapiens] 80 8e-16
gi|116812622 phosphatidylethanolamine-binding protein 4 [Homo sa... 80 1e-15
gi|52421790 mitogen-activated protein kinase kinase kinase 9 [Ho... 31 0.71
gi|7662058 tectonin beta-propeller repeat containing 2 [Homo sap... 30 1.6
gi|87298836 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho... 29 2.7
gi|23200000 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho... 29 2.7
gi|32483369 origin recognition complex, subunit 3 isoform 1 [Hom... 28 6.0
gi|32483367 origin recognition complex, subunit 3 isoform 2 [Hom... 28 6.0
gi|46409260 hypothetical protein LOC90288 [Homo sapiens] 27 7.9
>gi|4505621 prostatic binding protein [Homo sapiens]
Length = 187
Score = 396 bits (1017), Expect = e-111
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60
MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS
Sbjct: 1 MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS 60
Query: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120
GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY
Sbjct: 61 GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY 120
Query: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180
VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL
Sbjct: 121 VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180
Query: 181 YEQLSGK 187
YEQLSGK
Sbjct: 181 YEQLSGK 187
>gi|169636418 mitochondrial ribosomal protein L38 [Homo sapiens]
Length = 380
Score = 80.5 bits (197), Expect = 8e-16
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 10/170 (5%)
Query: 21 PQHPLHVTYAGAAVDEL----GKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSR 76
P+ PLHV YA D + G +TPT+ P ++++ + G L+TL+LT D
Sbjct: 169 PRVPLHVAYAVGEDDLMPVYCGNEVTPTEAAQAP-EVTYEA-EEGSLWTLLLTSLDGHLL 226
Query: 77 KDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEP 136
+ E+ H+L+ N+ GN ++ G V Y+ P +G+G+HR +L+++QD+P+ E
Sbjct: 227 EPDA--EYLHWLLTNIPGNRVAEGQVTCPYLPPFPARGSGIHRLAFLLFKQDQPIDFSED 284
Query: 137 ILSNRSGD-HRGKFKVASFRKKY-ELRAPVAGTCYQAEWDDYVPKLYEQL 184
+ + F+ F KK+ E P + +Q WDD V ++ QL
Sbjct: 285 ARPSPCYQLAQRTFRTFDFYKKHQETMTPAGLSFFQCRWDDSVTYIFHQL 334
>gi|116812622 phosphatidylethanolamine-binding protein 4 [Homo
sapiens]
Length = 227
Score = 80.1 bits (196), Expect = 1e-15
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 53 ISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTV----LSDYVG 108
+ + G G Y LV+ DPDAPSR +P+ R W H+LV ++KG D+ G + LS Y
Sbjct: 79 VKFPGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKGADLKKGKIQGQELSAYQA 138
Query: 109 SGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTC 168
PP +G HRY + VY Q+ + L + RG +K+ F ++ L P A T
Sbjct: 139 PSPPAHSGFHRYQFFVYLQEGKVIS----LLPKENKTRGSWKMDRFLNRFHLGEPEASTQ 194
Query: 169 YQAE 172
+ +
Sbjct: 195 FMTQ 198
>gi|52421790 mitogen-activated protein kinase kinase kinase 9 [Homo
sapiens]
Length = 1118
Score = 30.8 bits (68), Expect = 0.71
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 51 TSISWDGLDSGKLYTLVLTDPDAPSRKDPKYRE 83
T + +D L++GK L L +P+ P+R++ K RE
Sbjct: 777 TGLGFDLLEAGKCQLLPLEEPEPPAREEKKRRE 809
>gi|7662058 tectonin beta-propeller repeat containing 2 [Homo sapiens]
Length = 1411
Score = 29.6 bits (65), Expect = 1.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 33 AVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLT 69
A+D LG+V T K+ PT + W LD +L + LT
Sbjct: 1183 ALDSLGQVFIRTLSKSCPTGMHWTRLDLSQLGAVKLT 1219
>gi|87298836 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Homo
sapiens]
Length = 315
Score = 28.9 bits (63), Expect = 2.7
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 21 PQHPLHVTYAGAAVDELGKV----LTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSR 76
P + ++ A + GK+ L ++ + T ++W G+ +L D A S
Sbjct: 51 PPQAIKTSHLAALLKNQGKIFAFDLDARRLASMATLLAWAGVSCCELAE---EDFLAVSP 107
Query: 77 KDPKYREWHHFLV-VNMKGNDISSGTVLSDYVGSGPPKGTGLH 118
DP+YRE H+ L+ + G+ + S + + G+G P LH
Sbjct: 108 LDPRYREVHYVLLDPSCSGSGMPSRQL--EEPGAGTPSPVRLH 148
>gi|23200000 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Homo
sapiens]
Length = 315
Score = 28.9 bits (63), Expect = 2.7
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 21 PQHPLHVTYAGAAVDELGKV----LTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSR 76
P + ++ A + GK+ L ++ + T ++W G+ +L D A S
Sbjct: 51 PPQAIKTSHLAALLKNQGKIFAFDLDARRLASMATLLAWAGVSCCELAE---EDFLAVSP 107
Query: 77 KDPKYREWHHFLV-VNMKGNDISSGTVLSDYVGSGPPKGTGLH 118
DP+YRE H+ L+ + G+ + S + + G+G P LH
Sbjct: 108 LDPRYREVHYVLLDPSCSGSGMPSRQL--EEPGAGTPSPVRLH 148
>gi|32483369 origin recognition complex, subunit 3 isoform 1 [Homo
sapiens]
Length = 712
Score = 27.7 bits (60), Expect = 6.0
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 34 VDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHH-FLVVNM 92
VD K V R T S D L S + TDP S+K +W +VV +
Sbjct: 160 VDIKSKEEESVHVTQRKTHYSMDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSPPVVVIL 219
Query: 93 KGNDISSGTVLSDYV 107
K + + VL D++
Sbjct: 220 KDMESFATKVLQDFI 234
>gi|32483367 origin recognition complex, subunit 3 isoform 2 [Homo
sapiens]
Length = 711
Score = 27.7 bits (60), Expect = 6.0
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 34 VDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHH-FLVVNM 92
VD K V R T S D L S + TDP S+K +W +VV +
Sbjct: 160 VDIKSKEEESVHVTQRKTHYSMDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSPPVVVIL 219
Query: 93 KGNDISSGTVLSDYV 107
K + + VL D++
Sbjct: 220 KDMESFATKVLQDFI 234
>gi|46409260 hypothetical protein LOC90288 [Homo sapiens]
Length = 572
Score = 27.3 bits (59), Expect = 7.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 10 GPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSI 53
GPL QEVD PQ P VD L TQ++ RP ++
Sbjct: 292 GPLKKQEVDSAPQLP--------KVDLLTVPAVDTQMETRPMTL 327
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,582,571
Number of Sequences: 37866
Number of extensions: 411775
Number of successful extensions: 526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 10
length of query: 187
length of database: 18,247,518
effective HSP length: 96
effective length of query: 91
effective length of database: 14,612,382
effective search space: 1329726762
effective search space used: 1329726762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.