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Search of human proteins with 4505363
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505363 NADH dehydrogenase (ubiquinone) 1 beta subcomplex,
5, 16kDa precursor [Homo sapiens]
(189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505363 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5,... 385 e-107
gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sap... 28 3.6
gi|7657641 TDP-glucose 4,6-dehydratase [Homo sapiens] 28 3.6
gi|157671947 hypothetical protein LOC79974 isoform 2 [Homo sapiens] 28 3.6
gi|157671945 hypothetical protein LOC79974 isoform 1 [Homo sapiens] 28 3.6
gi|239754370 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|239748924 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|239742946 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|29550893 sulfotransferase family, cytosolic, 1A, phenol-prefe... 28 6.1
gi|4507303 sulfotransferase family, cytosolic, 1A, phenol-prefer... 28 6.1
gi|62868225 aryl sulfotransferase [Homo sapiens] 27 8.0
gi|62868223 aryl sulfotransferase [Homo sapiens] 27 8.0
gi|29550921 sulfotransferase family, cytosolic, 1A, phenol-prefe... 27 8.0
gi|10835035 sulfotransferase family, cytosolic, 1A, phenol-prefe... 27 8.0
>gi|4505363 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5,
16kDa precursor [Homo sapiens]
Length = 189
Score = 385 bits (989), Expect = e-107
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MAAMSLLRRVSVTAVAALSGRPLGTRLGFGGFLTRGFPKAAAPVRHSGDHGKRLFVIRPS 60
MAAMSLLRRVSVTAVAALSGRPLGTRLGFGGFLTRGFPKAAAPVRHSGDHGKRLFVIRPS
Sbjct: 1 MAAMSLLRRVSVTAVAALSGRPLGTRLGFGGFLTRGFPKAAAPVRHSGDHGKRLFVIRPS 60
Query: 61 RFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAELAEIPEGYVPEHWEYYKHPISRW 120
RFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAELAEIPEGYVPEHWEYYKHPISRW
Sbjct: 61 RFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAELAEIPEGYVPEHWEYYKHPISRW 120
Query: 121 IARNFYDSPEKIYERTMAVLQIEAEKAELRVKELEVRKLMHVRGDGPWYYYETIDKELID 180
IARNFYDSPEKIYERTMAVLQIEAEKAELRVKELEVRKLMHVRGDGPWYYYETIDKELID
Sbjct: 121 IARNFYDSPEKIYERTMAVLQIEAEKAELRVKELEVRKLMHVRGDGPWYYYETIDKELID 180
Query: 181 HSPKATPDN 189
HSPKATPDN
Sbjct: 181 HSPKATPDN 189
>gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo
sapiens]
Length = 796
Score = 28.5 bits (62), Expect = 3.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 125 FYDSPEKIYERTMAVLQIEAEKAELRVKELEV 156
F D EK+ + AVLQ+EAE+ E++ E ++
Sbjct: 599 FRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQI 630
>gi|7657641 TDP-glucose 4,6-dehydratase [Homo sapiens]
Length = 350
Score = 28.5 bits (62), Expect = 3.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 103 EGYVPEHWEYYKHPISRWIARNFY---DSPEKIYERTMAVLQ 141
E +V +WE YK P+ + N Y PEK+ + +++LQ
Sbjct: 174 ECFVQSYWEQYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQ 215
>gi|157671947 hypothetical protein LOC79974 isoform 2 [Homo sapiens]
Length = 783
Score = 28.5 bits (62), Expect = 3.6
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 HSGDHGKRLFVIRPSRFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAELAE 100
H G HG+R + RP FY + L+L + + G V I +N +G L +
Sbjct: 91 HFGSHGRRAILYRPP-FYSKTELQLHQHILTQHGYTVVIAEERLNAGLGPGLLEQ 144
>gi|157671945 hypothetical protein LOC79974 isoform 1 [Homo sapiens]
Length = 1026
Score = 28.5 bits (62), Expect = 3.6
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 HSGDHGKRLFVIRPSRFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAELAE 100
H G HG+R + RP FY + L+L + + G V I +N +G L +
Sbjct: 91 HFGSHGRRAILYRPP-FYSKTELQLHQHILTQHGYTVVIAEERLNAGLGPGLLEQ 144
>gi|239754370 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 27.7 bits (60), Expect = 6.1
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 8 RRVSVTAVAALSG--RPLGTRLGFGGFLTRGFPKAAAPVRHSGDHGKRL 54
+RV AV A R RL G +T G P+AA P HS H R+
Sbjct: 381 KRVPAQAVGAHGRCRRLFWWRLRVPGPVTPGSPRAACPGHHSEQHNSRV 429
>gi|239748924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 27.7 bits (60), Expect = 6.1
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 8 RRVSVTAVAALSG--RPLGTRLGFGGFLTRGFPKAAAPVRHSGDHGKRL 54
+RV AV A R RL G +T G P+AA P HS H R+
Sbjct: 381 KRVPAQAVGAHGRCRRLFWWRLRVPGPVTPGSPRAACPGHHSEQHNSRV 429
>gi|239742946 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 27.7 bits (60), Expect = 6.1
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 8 RRVSVTAVAALSG--RPLGTRLGFGGFLTRGFPKAAAPVRHSGDHGKRL 54
+RV AV A R RL G +T G P+AA P HS H R+
Sbjct: 381 KRVPAQAVGAHGRCRRLFWWRLRVPGPVTPGSPRAACPGHHSEQHNSRV 429
>gi|29550893 sulfotransferase family, cytosolic, 1A,
phenol-preferring, member 2 [Homo sapiens]
Length = 295
Score = 27.7 bits (60), Expect = 6.1
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 105 YVPEHWEYYK-HPISRWIARNFYDSPEKIYERTMAVL--QIEAEKAELRVKELEVRKLMH 161
+V E WE + HP+ + ++P++ ++ + + + E +L V+ +++
Sbjct: 175 HVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETVDLMVEHTSFKEMKK 234
Query: 162 VRGDGPWYYYETIDKELIDHS 182
P Y T+ +E +DHS
Sbjct: 235 ----NPMTNYTTVRREFMDHS 251
>gi|4507303 sulfotransferase family, cytosolic, 1A,
phenol-preferring, member 2 [Homo sapiens]
Length = 295
Score = 27.7 bits (60), Expect = 6.1
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 105 YVPEHWEYYK-HPISRWIARNFYDSPEKIYERTMAVL--QIEAEKAELRVKELEVRKLMH 161
+V E WE + HP+ + ++P++ ++ + + + E +L V+ +++
Sbjct: 175 HVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETVDLMVEHTSFKEMKK 234
Query: 162 VRGDGPWYYYETIDKELIDHS 182
P Y T+ +E +DHS
Sbjct: 235 ----NPMTNYTTVRREFMDHS 251
>gi|62868225 aryl sulfotransferase [Homo sapiens]
Length = 295
Score = 27.3 bits (59), Expect = 8.0
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 105 YVPEHWEYYK-HPISRWIARNFYDSPEKIYERTMAVL--QIEAEKAELRVKELEVRKLMH 161
+V E WE + HP+ + ++P++ ++ + + + E + V+ +++
Sbjct: 175 HVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETMDFMVQHTSFKEMKK 234
Query: 162 VRGDGPWYYYETIDKELIDHS 182
P Y T+ +EL+DHS
Sbjct: 235 ----NPMTNYTTVPQELMDHS 251
>gi|62868223 aryl sulfotransferase [Homo sapiens]
Length = 295
Score = 27.3 bits (59), Expect = 8.0
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 105 YVPEHWEYYK-HPISRWIARNFYDSPEKIYERTMAVL--QIEAEKAELRVKELEVRKLMH 161
+V E WE + HP+ + ++P++ ++ + + + E + V+ +++
Sbjct: 175 HVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETMDFMVQHTSFKEMKK 234
Query: 162 VRGDGPWYYYETIDKELIDHS 182
P Y T+ +EL+DHS
Sbjct: 235 ----NPMTNYTTVPQELMDHS 251
>gi|29550921 sulfotransferase family, cytosolic, 1A,
phenol-preferring, member 3 [Homo sapiens]
Length = 295
Score = 27.3 bits (59), Expect = 8.0
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 105 YVPEHWEYYK-HPISRWIARNFYDSPEKIYERTMAVL--QIEAEKAELRVKELEVRKLMH 161
+V E WE + HP+ + ++P++ ++ + + + E + V+ +++
Sbjct: 175 HVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETMDFMVQHTSFKEMKK 234
Query: 162 VRGDGPWYYYETIDKELIDHS 182
P Y T+ +EL+DHS
Sbjct: 235 ----NPMTNYTTVPQELMDHS 251
>gi|10835035 sulfotransferase family, cytosolic, 1A,
phenol-preferring, member 3 [Homo sapiens]
Length = 295
Score = 27.3 bits (59), Expect = 8.0
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 105 YVPEHWEYYK-HPISRWIARNFYDSPEKIYERTMAVL--QIEAEKAELRVKELEVRKLMH 161
+V E WE + HP+ + ++P++ ++ + + + E + V+ +++
Sbjct: 175 HVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETMDFMVQHTSFKEMKK 234
Query: 162 VRGDGPWYYYETIDKELIDHS 182
P Y T+ +EL+DHS
Sbjct: 235 ----NPMTNYTTVPQELMDHS 251
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.141 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,925,877
Number of Sequences: 37866
Number of extensions: 286687
Number of successful extensions: 892
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 14
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.