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Search of human proteins with 130489591
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|130489591 G protein-coupled receptor 108 isoform 2 [Homo
sapiens]
(301 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937301 G protein-coupled receptor 108 isoform 1 [Homo sapi... 605 e-173
gi|130489591 G protein-coupled receptor 108 isoform 2 [Homo sapi... 605 e-173
gi|56711308 G protein-coupled receptor 107 isoform 3 [Homo sapiens] 436 e-123
gi|211971060 G protein-coupled receptor 107 isoform 2 [Homo sapi... 425 e-119
gi|211971058 G protein-coupled receptor 107 isoform 1 [Homo sapi... 414 e-116
gi|14249524 transmembrane protein 87B [Homo sapiens] 69 7e-12
gi|31377765 transmembrane protein 87A isoform 1 [Homo sapiens] 59 7e-09
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 30 2.6
gi|45446740 ATP-binding cassette, sub-family A, member 2 isoform... 29 5.8
gi|47078218 ATP-binding cassette, sub-family A, member 2 isoform... 29 5.8
gi|239754344 PREDICTED: similar to hCG2031160 [Homo sapiens] 28 7.6
gi|239748892 PREDICTED: hypothetical protein XP_002346886 [Homo ... 28 7.6
gi|239742916 PREDICTED: hypothetical protein XP_002342690 [Homo ... 28 7.6
gi|4506581 retinitis pigmentosa GTPase regulator isoform A [Homo... 28 9.9
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 28 9.9
gi|50080193 olfactory receptor, family 10, subfamily G, member 9... 28 9.9
>gi|122937301 G protein-coupled receptor 108 isoform 1 [Homo
sapiens]
Length = 543
Score = 605 bits (1560), Expect = e-173
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFT 60
MIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFT
Sbjct: 243 MIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFT 302
Query: 61 KSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSD 120
KSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSD
Sbjct: 303 KSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSD 362
Query: 121 KEKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWSIR 180
KEKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWSIR
Sbjct: 363 KEKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWSIR 422
Query: 181 HLQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVE 240
HLQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVE
Sbjct: 423 HLQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVE 482
Query: 241 GSTLAFFVLTGYKFQPTGNNPYLQLPQEDEEDVQMEQVMTDSGFREGLSKVNKTASGREL 300
GSTLAFFVLTGYKFQPTGNNPYLQLPQEDEEDVQMEQVMTDSGFREGLSKVNKTASGREL
Sbjct: 483 GSTLAFFVLTGYKFQPTGNNPYLQLPQEDEEDVQMEQVMTDSGFREGLSKVNKTASGREL 542
Query: 301 L 301
L
Sbjct: 543 L 543
>gi|130489591 G protein-coupled receptor 108 isoform 2 [Homo
sapiens]
Length = 301
Score = 605 bits (1560), Expect = e-173
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFT 60
MIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFT
Sbjct: 1 MIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFT 60
Query: 61 KSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSD 120
KSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSD
Sbjct: 61 KSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSD 120
Query: 121 KEKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWSIR 180
KEKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWSIR
Sbjct: 121 KEKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWSIR 180
Query: 181 HLQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVE 240
HLQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVE
Sbjct: 181 HLQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVE 240
Query: 241 GSTLAFFVLTGYKFQPTGNNPYLQLPQEDEEDVQMEQVMTDSGFREGLSKVNKTASGREL 300
GSTLAFFVLTGYKFQPTGNNPYLQLPQEDEEDVQMEQVMTDSGFREGLSKVNKTASGREL
Sbjct: 241 GSTLAFFVLTGYKFQPTGNNPYLQLPQEDEEDVQMEQVMTDSGFREGLSKVNKTASGREL 300
Query: 301 L 301
L
Sbjct: 301 L 301
>gi|56711308 G protein-coupled receptor 107 isoform 3 [Homo sapiens]
Length = 552
Score = 436 bits (1122), Expect = e-123
Identities = 209/296 (70%), Positives = 251/296 (84%), Gaps = 1/296 (0%)
Query: 2 IREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFTK 61
I EKNPD +LSA E+PL KLY+ M+ F +G W+ IL + VFKIHWLMAAL FTK
Sbjct: 246 ITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTK 305
Query: 62 SISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSDK 121
S+SL+FH+I+Y++I+SQG PIEG AV+YYI HLLKGALLFITIALIG+GWAFIK++LSDK
Sbjct: 306 SLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDK 365
Query: 122 EKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWSIRH 181
+KK+F IVIP+QVLANVAYIIIES EEG ++Y LWK+ LFLVDL+CCGAILFPVVWSIRH
Sbjct: 366 DKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVVWSIRH 425
Query: 182 LQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVEG 241
LQ+AS TDGK A+NLAKLKLFRHYYV+++CY+YFTRIIA LL++AVPFQW+WLYQLL E
Sbjct: 426 LQEASATDGKAAINLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQWKWLYQLLDET 485
Query: 242 STLAFFVLTGYKFQPTGNNPYLQLPQEDEEDVQMEQVMTDSGFREGLSKVNKTASG 297
+TL FFVLTGYKF+P +NPYLQL QE EED++ME V+T SG E + KV K +G
Sbjct: 486 ATLVFFVLTGYKFRPASDNPYLQLSQE-EEDLEMESVVTTSGVMESMKKVKKVTNG 540
>gi|211971060 G protein-coupled receptor 107 isoform 2 [Homo
sapiens]
Length = 571
Score = 425 bits (1092), Expect = e-119
Identities = 209/315 (66%), Positives = 251/315 (79%), Gaps = 20/315 (6%)
Query: 2 IREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFTK 61
I EKNPD +LSA E+PL KLY+ M+ F +G W+ IL + VFKIHWLMAAL FTK
Sbjct: 246 ITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTK 305
Query: 62 SISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSDK 121
S+SL+FH+I+Y++I+SQG PIEG AV+YYI HLLKGALLFITIALIG+GWAFIK++LSDK
Sbjct: 306 SLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDK 365
Query: 122 EKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWSIRH 181
+KK+F IVIP+QVLANVAYIIIES EEG ++Y LWK+ LFLVDL+CCGAILFPVVWSIRH
Sbjct: 366 DKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVVWSIRH 425
Query: 182 LQDASGTDGK-------------------VAVNLAKLKLFRHYYVMVICYVYFTRIIAIL 222
LQ+AS TDGK A+NLAKLKLFRHYYV+++CY+YFTRIIA L
Sbjct: 426 LQEASATDGKGDSMGPLQQRANLRAGSRIAAINLAKLKLFRHYYVLIVCYIYFTRIIAFL 485
Query: 223 LQVAVPFQWQWLYQLLVEGSTLAFFVLTGYKFQPTGNNPYLQLPQEDEEDVQMEQVMTDS 282
L++AVPFQW+WLYQLL E +TL FFVLTGYKF+P +NPYLQL QE EED++ME V+T S
Sbjct: 486 LKLAVPFQWKWLYQLLDETATLVFFVLTGYKFRPASDNPYLQLSQE-EEDLEMESVVTTS 544
Query: 283 GFREGLSKVNKTASG 297
G E + KV K +G
Sbjct: 545 GVMESMKKVKKVTNG 559
>gi|211971058 G protein-coupled receptor 107 isoform 1 [Homo
sapiens]
Length = 600
Score = 414 bits (1063), Expect = e-116
Identities = 209/344 (60%), Positives = 251/344 (72%), Gaps = 49/344 (14%)
Query: 2 IREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFTK 61
I EKNPD +LSA E+PL KLY+ M+ F +G W+ IL + VFKIHWLMAAL FTK
Sbjct: 246 ITEKNPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTK 305
Query: 62 SISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSDK 121
S+SL+FH+I+Y++I+SQG PIEG AV+YYI HLLKGALLFITIALIG+GWAFIK++LSDK
Sbjct: 306 SLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDK 365
Query: 122 EKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWSIRH 181
+KK+F IVIP+QVLANVAYIIIES EEG ++Y LWK+ LFLVDL+CCGAILFPVVWSIRH
Sbjct: 366 DKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVVWSIRH 425
Query: 182 LQDASGTDGK------------------------------------------------VA 193
LQ+AS TDGK A
Sbjct: 426 LQEASATDGKGDSMGPLQQRANLRAGSRIESHHFAQADLELLASSCPPASVSQRAGITAA 485
Query: 194 VNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVEGSTLAFFVLTGYK 253
+NLAKLKLFRHYYV+++CY+YFTRIIA LL++AVPFQW+WLYQLL E +TL FFVLTGYK
Sbjct: 486 INLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQWKWLYQLLDETATLVFFVLTGYK 545
Query: 254 FQPTGNNPYLQLPQEDEEDVQMEQVMTDSGFREGLSKVNKTASG 297
F+P +NPYLQL QE EED++ME V+T SG E + KV K +G
Sbjct: 546 FRPASDNPYLQLSQE-EEDLEMESVVTTSGVMESMKKVKKVTNG 588
>gi|14249524 transmembrane protein 87B [Homo sapiens]
Length = 555
Score = 68.6 bits (166), Expect = 7e-12
Identities = 67/304 (22%), Positives = 134/304 (44%), Gaps = 26/304 (8%)
Query: 7 PDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFTKSISLL 66
P G++SA++ PL YMVM ++ GI W++ + +I + +AA+ F +
Sbjct: 205 PHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWIAAVIFLGMLEKA 264
Query: 67 FHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSDKEKKVF 126
Y I++ G +GL + + +K L + + ++ G+ +K L +V
Sbjct: 265 VFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVKPRLGTVMHRVI 324
Query: 127 GIVIPMQVLANVAYIIIESREEGASDY---VLWKEILFLVDLICCGAILFPVVWSIRHLQ 183
G+ + + A V ++ R G S++ VL IL ++D I I + +++ L
Sbjct: 325 GLGLLYLIFAAVEGVM---RVIGGSNHLAVVLDDIILAVIDSIFVWFIFISLAQTMKTL- 380
Query: 184 DASGTDGKVAVNLAKLKLFRHY----YVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLV 239
++ N K L+RH+ V+ + F ++A Q W+ + +
Sbjct: 381 -------RLRKNTVKFSLYRHFKNTLIFAVLASIVFMGWTTKTFRIA-KCQSDWMERWVD 432
Query: 240 EGSTLAFF----VLTGYKFQPTGNNP-YLQLPQEDEEDVQMEQVM-TDSGFREGLS-KVN 292
+ F ++ + ++P+ NN Y +P D+ D ++E+ M T EG+ + +
Sbjct: 433 DAFWSFLFSLILIVIMFLWRPSANNQRYAFMPLIDDSDDEIEEFMVTSENLTEGIKLRAS 492
Query: 293 KTAS 296
K+ S
Sbjct: 493 KSVS 496
>gi|31377765 transmembrane protein 87A isoform 1 [Homo sapiens]
Length = 555
Score = 58.5 bits (140), Expect = 7e-09
Identities = 70/323 (21%), Positives = 132/323 (40%), Gaps = 51/323 (15%)
Query: 2 IREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFTK 61
+ K P +L+ + PL +MVM ++ G+ W++ + +I + + A+ F
Sbjct: 210 VEVKGPYEYLTLEDYPLMIFFMVMCIVYVLFGVLWLAWSACYWRDLLRIQFWIGAVIFLG 269
Query: 62 SISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSDK 121
+ + I +G ++G ++ + +K +L + ++ G+ +K L
Sbjct: 270 MLEKAVFYAEFQNIRYKGESVQGALILAELLSAVKRSLARTLVIIVSLGYGIVKPRL--- 326
Query: 122 EKKVFGIVIPMQVLANVAYIIIESRE-----EGA-SDYVLWKEI-LFLVDLICCGAILFP 174
G+ + V+A Y++ E GA +D I L +D C I
Sbjct: 327 -----GVTLHKVVVAGALYLLFSGMEGVLRVTGAQTDLASLAFIPLAFLDTALCWWIFIS 381
Query: 175 VVWSIRHLQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQV---AVPFQW 231
+ +++ L K+ N+ KL L+RH+ +I V + + I + V Q
Sbjct: 382 LTQTMKLL--------KLRRNIVKLSLYRHFTNTLILAVAASIVFIIWTTMKFRIVTCQS 433
Query: 232 QW--------LYQLLVEGSTLAFFVLTGYKFQPTGNN---PYLQLPQEDEEDVQMEQVMT 280
W +++LL VL ++P+ NN + L +E+EED Q E ++
Sbjct: 434 DWRELWVDDAIWRLLFSMILFVIMVL----WRPSANNQRFAFSPLSEEEEEDEQKEPMLK 489
Query: 281 DS--GFR--------EGLSKVNK 293
+S G + G SKVNK
Sbjct: 490 ESFEGMKMRSTKQEPNGNSKVNK 512
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 30.0 bits (66), Expect = 2.6
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 254 FQPTGNNPYL---------QLPQEDEEDVQMEQVMTDSGFREGLSKVNKTASG 297
F+PTG+NP + +E+EE+ + E + G + +S++++T +G
Sbjct: 251 FEPTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISETLAG 303
>gi|45446740 ATP-binding cassette, sub-family A, member 2 isoform a
[Homo sapiens]
Length = 2436
Score = 28.9 bits (63), Expect = 5.8
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 73 YFINSQGHPIEGLAVMYYIAHLLKGA----LLFITIALIGSGWAFIKYVLSDKEKKVFGI 128
Y I HP+ + + +LL+G +FI +A+ +F+ +++++K K +
Sbjct: 1766 YGITVTNHPMNKTSASLSLDYLLQGTDVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHL 1825
Query: 129 VIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILF 173
Q ++ II ++YV W + +LV CC ILF
Sbjct: 1826 ----QFVSGCNPIIY-----WLANYV-WDMLNYLVPATCCVIILF 1860
>gi|47078218 ATP-binding cassette, sub-family A, member 2 isoform b
[Homo sapiens]
Length = 2466
Score = 28.9 bits (63), Expect = 5.8
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 73 YFINSQGHPIEGLAVMYYIAHLLKGA----LLFITIALIGSGWAFIKYVLSDKEKKVFGI 128
Y I HP+ + + +LL+G +FI +A+ +F+ +++++K K +
Sbjct: 1796 YGITVTNHPMNKTSASLSLDYLLQGTDVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHL 1855
Query: 129 VIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILF 173
Q ++ II ++YV W + +LV CC ILF
Sbjct: 1856 ----QFVSGCNPIIY-----WLANYV-WDMLNYLVPATCCVIILF 1890
>gi|239754344 PREDICTED: similar to hCG2031160 [Homo sapiens]
Length = 177
Score = 28.5 bits (62), Expect = 7.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 113 FIKYVLSDKEKKV----FGIVIPMQVLANVAYIIIESREEGA 150
FI +SD KK+ G IP Q L N+A+ + +REE A
Sbjct: 29 FITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETA 70
>gi|239748892 PREDICTED: hypothetical protein XP_002346886 [Homo
sapiens]
Length = 177
Score = 28.5 bits (62), Expect = 7.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 113 FIKYVLSDKEKKV----FGIVIPMQVLANVAYIIIESREEGA 150
FI +SD KK+ G IP Q L N+A+ + +REE A
Sbjct: 29 FITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETA 70
>gi|239742916 PREDICTED: hypothetical protein XP_002342690 [Homo
sapiens]
Length = 177
Score = 28.5 bits (62), Expect = 7.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 113 FIKYVLSDKEKKV----FGIVIPMQVLANVAYIIIESREEGA 150
FI +SD KK+ G IP Q L N+A+ + +REE A
Sbjct: 29 FITQSVSDSRKKLQKLESGSQIPQQELINLAFKVFNNREETA 70
>gi|4506581 retinitis pigmentosa GTPase regulator isoform A [Homo
sapiens]
Length = 815
Score = 28.1 bits (61), Expect = 9.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 3 REKNPDGFLSAAEMPLFKLYMVMSACFLAAGIF 35
RE++PD F +P + + +SACFL +F
Sbjct: 415 RERSPDSFSMRRTLPPIEGTLGLSACFLPNSVF 447
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 28.1 bits (61), Expect = 9.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 3 REKNPDGFLSAAEMPLFKLYMVMSACFLAAGIF 35
RE++PD F +P + + +SACFL +F
Sbjct: 415 RERSPDSFSMRRTLPPIEGTLGLSACFLPNSVF 447
>gi|50080193 olfactory receptor, family 10, subfamily G, member 9
[Homo sapiens]
Length = 311
Score = 28.1 bits (61), Expect = 9.9
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 12 SAAEMPLF-KLYMVMSACFLAAGIFWVSILCRNTYSVFKIH 51
SA EM +F + +V S CFL + +VSI+C S+ +IH
Sbjct: 192 SANEMVIFVDIGLVASGCFLLIVLSYVSIVC----SILRIH 228
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.142 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,401,762
Number of Sequences: 37866
Number of extensions: 416125
Number of successful extensions: 1145
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 19
length of query: 301
length of database: 18,247,518
effective HSP length: 102
effective length of query: 199
effective length of database: 14,385,186
effective search space: 2862652014
effective search space used: 2862652014
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.