Search of human proteins with 13027604

Search of human proteins with 13027604

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13027604 mitochondrial ribosomal protein S34 [Homo sapiens]
         (218 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13027604 mitochondrial ribosomal protein S34 [Homo sapiens]        451   e-127
gi|4507381 thromboxane A2 receptor [Homo sapiens]                      31   0.93 
gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo sapi...    30   2.1  
gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo sapi...    30   2.1  
gi|21264614 suppression of tumorigenicity 5 isoform 2 [Homo sapi...    30   2.1  
gi|183396787 BCL-6 interacting corepressor isoform c [Homo sapiens]    29   3.5  
gi|154813195 DENN/MADD domain containing 2A [Homo sapiens]             28   6.0  
gi|17738285 zinc finger with KRAB and SCAN domains 4 [Homo sapiens]    28   7.9  

>gi|13027604 mitochondrial ribosomal protein S34 [Homo sapiens]
          Length = 218

 Score =  451 bits (1161), Expect = e-127
 Identities = 218/218 (100%), Positives = 218/218 (100%)

Query: 1   MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR 60
           MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR
Sbjct: 1   MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR 60

Query: 61  ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF 120
           ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF
Sbjct: 61  ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF 120

Query: 121 KGKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVPYPPLLRAMIIAERQK 180
           KGKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVPYPPLLRAMIIAERQK
Sbjct: 121 KGKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVPYPPLLRAMIIAERQK 180

Query: 181 NGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV 218
           NGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV
Sbjct: 181 NGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV 218


>gi|4507381 thromboxane A2 receptor [Homo sapiens]
          Length = 343

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 38  YETLTRPFSGRRLPV--RAWADVRRESRLLQLLGRLPLFGLGRLVTRKSWLW 87
           Y  +TRPFS   +    RAWA V         LG LPL G+GR   +    W
Sbjct: 131 YLGITRPFSRPAVASQRRAWATVGLVWAAALALGLLPLLGVGRYTVQYPGSW 182


>gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo
           sapiens]
          Length = 1137

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 24  QLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRRESRLLQLLGRL 71
           +L RP DS+L  VD+E L    S R+L +R +A +  E R++ +  +L
Sbjct: 860 ELRRPMDSRLEHVDFECLFTCLSVRQL-IRIFASLLLERRVIFVADKL 906


>gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo
           sapiens]
          Length = 1137

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 24  QLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRRESRLLQLLGRL 71
           +L RP DS+L  VD+E L    S R+L +R +A +  E R++ +  +L
Sbjct: 860 ELRRPMDSRLEHVDFECLFTCLSVRQL-IRIFASLLLERRVIFVADKL 906


>gi|21264614 suppression of tumorigenicity 5 isoform 2 [Homo
           sapiens]
          Length = 717

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 24  QLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRRESRLLQLLGRL 71
           +L RP DS+L  VD+E L    S R+L +R +A +  E R++ +  +L
Sbjct: 440 ELRRPMDSRLEHVDFECLFTCLSVRQL-IRIFASLLLERRVIFVADKL 486


>gi|183396787 BCL-6 interacting corepressor isoform c [Homo sapiens]
          Length = 1755

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 12/61 (19%)

Query: 157  PEDSLAS-VPYPPLLRAMIIAERQKNGDTS---------TEEPMLNVQRIRMEPWDYPAK 206
            P D +AS +P+ P LR  +  +R+ +GD+S          E+P+L  +R R+   D+P +
Sbjct: 1116 PADQVASDMPHSPTLR--VDRKRKVSGDSSHTETTAEEVPEDPLLKAKRRRVSKDDWPER 1173

Query: 207  Q 207
            +
Sbjct: 1174 E 1174


>gi|154813195 DENN/MADD domain containing 2A [Homo sapiens]
          Length = 1009

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 24  QLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRRESRLLQLLGRLPLFGL---GRLV 80
           +L RP DS+L  VD+E+L    S R L V  +A +  E R++ +  +L +        + 
Sbjct: 729 ELCRPLDSRLEHVDFESLFSSLSVRHL-VCVFASLLLERRVIFIADKLSILSKCCHAMVA 787

Query: 81  TRKSWLWQH 89
               + WQH
Sbjct: 788 LIYPFAWQH 796


>gi|17738285 zinc finger with KRAB and SCAN domains 4 [Homo sapiens]
          Length = 545

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 77  GRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTFKGKTESEAREIE 132
           G+   R S L +H         R+  D   QN +HG++W     +G+TES+    E
Sbjct: 438 GKAFRRNSHLLRHQ--------RIHGDKNVQNPEHGESW---ESQGRTESQWENTE 482


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,720,840
Number of Sequences: 37866
Number of extensions: 391201
Number of successful extensions: 927
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 923
Number of HSP's gapped (non-prelim): 12
length of query: 218
length of database: 18,247,518
effective HSP length: 98
effective length of query: 120
effective length of database: 14,536,650
effective search space: 1744398000
effective search space used: 1744398000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.