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Search of human proteins with 4502319
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502319 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit
e1 [Homo sapiens]
(81 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502319 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e... 181 1e-46
gi|239752789 PREDICTED: similar to ATPase, H+ transporting, lyso... 136 3e-33
gi|239747332 PREDICTED: hypothetical protein XP_002346425 [Homo ... 136 3e-33
gi|239741157 PREDICTED: hypothetical protein XP_002342123 [Homo ... 136 3e-33
gi|154689666 ATPase, H+ transporting, V0 subunit isoform 1 [Homo... 135 5e-33
gi|154689796 ATPase, H+ transporting, V0 subunit isoform 2 [Homo... 79 8e-16
gi|115583685 solute carrier family 16, member 1 [Homo sapiens] 27 2.7
gi|217272887 WD repeat domain 63 [Homo sapiens] 27 4.6
gi|224548987 presenilin stabilization factor-like isoform 2 [Hom... 26 6.0
gi|224994205 wolframin [Homo sapiens] 26 6.0
gi|224994203 wolframin [Homo sapiens] 26 6.0
gi|16445421 secretory carrier membrane protein 3 isoform 2 [Homo... 26 7.8
gi|16445419 secretory carrier membrane protein 3 isoform 1 [Homo... 26 7.8
gi|148886661 exportin 4 [Homo sapiens] 26 7.8
>gi|4502319 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1
[Homo sapiens]
Length = 81
Score = 181 bits (459), Expect = 1e-46
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 1 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQL 60
MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQL
Sbjct: 1 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQL 60
Query: 61 NPLFGPQLKNETIWYLKYHWP 81
NPLFGPQLKNETIWYLKYHWP
Sbjct: 61 NPLFGPQLKNETIWYLKYHWP 81
>gi|239752789 PREDICTED: similar to ATPase, H+ transporting,
lysosomal 9kDa, V0 subunit e1 [Homo sapiens]
Length = 191
Score = 136 bits (343), Expect = 3e-33
Identities = 60/80 (75%), Positives = 68/80 (85%)
Query: 2 AYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQLN 61
AYH L V LIV+S+FWGF+ FLVPWFIPK +R VIIT+LVTCSVCCYLFWL+AIL
Sbjct: 112 AYHSLMVLLIVISMFWGFLSFLVPWFIPKSLSRVVIITILVTCSVCCYLFWLVAILFHFC 171
Query: 62 PLFGPQLKNETIWYLKYHWP 81
PLFGPQLKNET WYL++HWP
Sbjct: 172 PLFGPQLKNETSWYLRHHWP 191
>gi|239747332 PREDICTED: hypothetical protein XP_002346425 [Homo
sapiens]
Length = 191
Score = 136 bits (343), Expect = 3e-33
Identities = 60/80 (75%), Positives = 68/80 (85%)
Query: 2 AYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQLN 61
AYH L V LIV+S+FWGF+ FLVPWFIPK +R VIIT+LVTCSVCCYLFWL+AIL
Sbjct: 112 AYHSLMVLLIVISMFWGFLSFLVPWFIPKSLSRVVIITILVTCSVCCYLFWLVAILFHFC 171
Query: 62 PLFGPQLKNETIWYLKYHWP 81
PLFGPQLKNET WYL++HWP
Sbjct: 172 PLFGPQLKNETSWYLRHHWP 191
>gi|239741157 PREDICTED: hypothetical protein XP_002342123 [Homo
sapiens]
Length = 191
Score = 136 bits (343), Expect = 3e-33
Identities = 60/80 (75%), Positives = 68/80 (85%)
Query: 2 AYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQLN 61
AYH L V LIV+S+FWGF+ FLVPWFIPK +R VIIT+LVTCSVCCYLFWL+AIL
Sbjct: 112 AYHSLMVLLIVISMFWGFLSFLVPWFIPKSLSRVVIITILVTCSVCCYLFWLVAILFHFC 171
Query: 62 PLFGPQLKNETIWYLKYHWP 81
PLFGPQLKNET WYL++HWP
Sbjct: 172 PLFGPQLKNETSWYLRHHWP 191
>gi|154689666 ATPase, H+ transporting, V0 subunit isoform 1 [Homo
sapiens]
Length = 130
Score = 135 bits (341), Expect = 5e-33
Identities = 57/80 (71%), Positives = 66/80 (82%)
Query: 1 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQL 60
M H +P+I+ + FWG VG PWF+PKGPNRGVIITMLV +VCCYLFWLIAILAQL
Sbjct: 50 MTAHSFALPVIIFTTFWGLVGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLIAILAQL 109
Query: 61 NPLFGPQLKNETIWYLKYHW 80
NPLFGPQLKNETIWY+++ W
Sbjct: 110 NPLFGPQLKNETIWYVRFLW 129
>gi|154689796 ATPase, H+ transporting, V0 subunit isoform 2 [Homo
sapiens]
Length = 213
Score = 79.0 bits (193), Expect = 8e-16
Identities = 36/71 (50%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 1 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLF-----WLIA 55
M H +P+I+ + FWG VG PWF+PKGPNRGVIITMLV +VCCYL +A
Sbjct: 50 MTAHSFALPVIIFTTFWGLVGIAGPWFVPKGPNRGVIITMLVATAVCCYLLCPALGMTVA 109
Query: 56 ILAQLNPLFGP 66
L+ P GP
Sbjct: 110 PLSLTTPSSGP 120
>gi|115583685 solute carrier family 16, member 1 [Homo sapiens]
Length = 500
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 6 LTVPLIVMSVFWGFVGFLVPWFIPK---------GPNRGVIITMLVTCSVCCYLFWLIAI 56
L+ + V+ GF GF W GP R LVT CC + +
Sbjct: 349 LSTTYVGFCVYAGFFGFAFGWLSSVLFETLMDLVGPQRFSSAVGLVTIVECCPVLLGPPL 408
Query: 57 LAQLNPLFG 65
L +LN ++G
Sbjct: 409 LGRLNDMYG 417
>gi|217272887 WD repeat domain 63 [Homo sapiens]
Length = 891
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 33 NRGVIITMLVTCSV-CCYLFWLIAILAQLNPLFGPQLKNETI 73
NR I LVTCS C FW I L P + K E+I
Sbjct: 503 NRSGICCQLVTCSADCTICFWDIRPQKPLTPQTTEKKKEESI 544
>gi|224548987 presenilin stabilization factor-like isoform 2 [Homo
sapiens]
Length = 216
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 1 MAYHGLTVPLIVMSVFWGFVGF 22
+AY +T+ +I++ VFWG V F
Sbjct: 116 LAYAFMTLVIILLHVFWGIVFF 137
>gi|224994205 wolframin [Homo sapiens]
Length = 890
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 5 GLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLF 64
GL L M + W ++ L FI V++ + V C + YL +L +AQL
Sbjct: 466 GLLSLLPSMPLNWPYLKVLGQTFITVPVGHLVVLNVSVPCLLYVYLLYLFFRMAQLRNFK 525
Query: 65 G 65
G
Sbjct: 526 G 526
>gi|224994203 wolframin [Homo sapiens]
Length = 890
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 5 GLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLF 64
GL L M + W ++ L FI V++ + V C + YL +L +AQL
Sbjct: 466 GLLSLLPSMPLNWPYLKVLGQTFITVPVGHLVVLNVSVPCLLYVYLLYLFFRMAQLRNFK 525
Query: 65 G 65
G
Sbjct: 526 G 526
>gi|16445421 secretory carrier membrane protein 3 isoform 2 [Homo
sapiens]
Length = 321
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 17 WGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAIL 57
WGF G++ +PKG N V + ML+ LF IA+L
Sbjct: 231 WGFSGWISALVVPKG-NTAVSVLMLLV----ALLFTGIAVL 266
>gi|16445419 secretory carrier membrane protein 3 isoform 1 [Homo
sapiens]
Length = 347
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 17 WGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAIL 57
WGF G++ +PKG N V + ML+ LF IA+L
Sbjct: 257 WGFSGWISALVVPKG-NTAVSVLMLLV----ALLFTGIAVL 292
>gi|148886661 exportin 4 [Homo sapiens]
Length = 1151
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 55 AILAQLNPLFGPQLKNETIWYLK 77
AI A L L PQ+ + +W+LK
Sbjct: 621 AIRADLTHLLSPQMGKDIVWFLK 643
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.333 0.149 0.557
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,232,152
Number of Sequences: 37866
Number of extensions: 114039
Number of successful extensions: 320
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 14
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.