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Search of human proteins with 42794625
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42794625 alpha-methylacyl-CoA racemase isoform 1 [Homo
sapiens]
(382 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42794625 alpha-methylacyl-CoA racemase isoform 1 [Homo sapiens] 768 0.0
gi|42822893 alpha-methylacyl-CoA racemase isoform 2 [Homo sapiens] 259 2e-69
gi|13376042 dermal papilla derived protein 13 [Homo sapiens] 103 3e-22
gi|14790124 caspase 9 isoform alpha preproprotein [Homo sapiens] 31 1.6
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 30 3.6
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 30 3.6
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 30 3.6
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 30 3.6
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 30 4.7
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 30 4.7
gi|39204547 testis spermatogenesis apoptosis-related protein 6 [... 29 6.2
>gi|42794625 alpha-methylacyl-CoA racemase isoform 1 [Homo sapiens]
Length = 382
Score = 768 bits (1982), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQP 60
MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQP
Sbjct: 1 MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQP 60
Query: 61 RGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLA 120
RGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLA
Sbjct: 61 RGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLA 120
Query: 121 GHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMALFDRTRTGKGQVI 180
GHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMALFDRTRTGKGQVI
Sbjct: 121 GHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMALFDRTRTGKGQVI 180
Query: 181 DANMVEGTAYLSSFLWKTQKLSLWEAPRGQNMLDGGAPFYTTYRTADGEFMAVGAIEPQF 240
DANMVEGTAYLSSFLWKTQKLSLWEAPRGQNMLDGGAPFYTTYRTADGEFMAVGAIEPQF
Sbjct: 181 DANMVEGTAYLSSFLWKTQKLSLWEAPRGQNMLDGGAPFYTTYRTADGEFMAVGAIEPQF 240
Query: 241 YELLIKGLGLKSDELPNQMSMDDWPEMKKKFADVFAEKTKAEWCQIFDGTDACVTPVLTF 300
YELLIKGLGLKSDELPNQMSMDDWPEMKKKFADVFAEKTKAEWCQIFDGTDACVTPVLTF
Sbjct: 241 YELLIKGLGLKSDELPNQMSMDDWPEMKKKFADVFAEKTKAEWCQIFDGTDACVTPVLTF 300
Query: 301 EEVVHHDHNKERGSFITSEEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEFGFS 360
EEVVHHDHNKERGSFITSEEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEFGFS
Sbjct: 301 EEVVHHDHNKERGSFITSEEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEFGFS 360
Query: 361 REEIYQLNSDKIIESNKVKASL 382
REEIYQLNSDKIIESNKVKASL
Sbjct: 361 REEIYQLNSDKIIESNKVKASL 382
>gi|42822893 alpha-methylacyl-CoA racemase isoform 2 [Homo sapiens]
Length = 198
Score = 259 bits (663), Expect = 2e-69
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQP 60
MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQP
Sbjct: 1 MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQP 60
Query: 61 RGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLA 120
RGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLA
Sbjct: 61 RGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLA 120
Query: 121 GHDINYLALSG 131
GHDINYLALSG
Sbjct: 121 GHDINYLALSG 131
>gi|13376042 dermal papilla derived protein 13 [Homo sapiens]
Length = 434
Score = 103 bits (256), Expect = 3e-22
Identities = 84/332 (25%), Positives = 141/332 (42%), Gaps = 62/332 (18%)
Query: 3 LQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLG--------------- 47
L+G+ +++L+ + GPF M L D GA V++V+RPG+ D G
Sbjct: 48 LEGVKILDLTRVLAGPFATMNLGDLGAEVIKVERPGAGDDTRTWGPPFVGTESTYYLSVN 107
Query: 48 RGKRSLVLDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARL 107
R K+S+ +++K P+G ++IY +
Sbjct: 108 RNKKSIAVNIKDPKGV-------------------------------------KIIYCSI 130
Query: 108 SGFGQSGSFCRLAGHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMA 167
+G+GQ+G + AG+D A+SG++ G +P P + D A G + A G IMA
Sbjct: 131 TGYGQTGPISQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATG--LYAYGAIMA 188
Query: 168 -LFDRTRTGKGQVIDANMVEGTAYLSSFLWKTQKLSLWEAPRGQNMLDGGAPFYTTYRTA 226
L + +TGKG ID N++ S + + EA R G Y ++T
Sbjct: 189 GLIQKYKTGKGLFIDCNLLSSQVACLSHIAANYLIGQKEAKR-WGTAHGSIVPYQAFKTK 247
Query: 227 DGEFMAVGAIEPQFYELLIKGLGL-----KSDELPNQMSMDDWPEMKKKFADVFAEKTKA 281
DG ++ VGA Q + + K L L S N + + + E+ K ++ F E+ +
Sbjct: 248 DG-YIVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIKILSERFEEELTS 306
Query: 282 EWCQIFDGTDACVTPVLTFEEVVHHDHNKERG 313
+W +F+G+ P+ + V N G
Sbjct: 307 KWLYLFEGSGVPYGPINNMKNVFAEPQNAVSG 338
>gi|14790124 caspase 9 isoform alpha preproprotein [Homo sapiens]
Length = 416
Score = 31.2 bits (69), Expect = 1.6
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 29/120 (24%)
Query: 36 RPGSRYDVSRLGRGKR-----SLVLDLKQPRGAAVL----------------------RR 68
RP D+ R G G R L++DL + RG+ L R+
Sbjct: 36 RPHMIEDIQRAGSGSRRDQARQLIIDL-ETRGSQALPLFISCLEDTGQDMLASFLRTNRQ 94
Query: 69 LCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLAGH-DINYL 127
K S LE V+ PE+L+ E PR + GFG G+ L G+ D+ Y+
Sbjct: 95 AAKLSKPTLENLTPVVLRPEIRKPEVLRPETPRPVDIGSGGFGDVGALESLRGNADLAYI 154
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 30.0 bits (66), Expect = 3.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 308 HNKERGSFITSEEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEFGFSREEIYQL 367
H++E G ++ P A N A ++D +G+ + +L E FS+ +IY+
Sbjct: 2508 HDRESGEEKQEHLTEMDPFYAE---NFMANTYLRKDRHLGKSEDVLLGETFFSKSQIYKG 2564
Query: 368 NSDKIIESNKVK 379
NS+K ++ K K
Sbjct: 2565 NSEKNVKIEKNK 2576
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 30.0 bits (66), Expect = 3.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 308 HNKERGSFITSEEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEFGFSREEIYQL 367
H++E G ++ P A N A ++D +G+ + +L E FS+ +IY+
Sbjct: 2437 HDRESGEEKQEHLTEMDPFYAE---NFMANTYLRKDRHLGKSEDVLLGETFFSKSQIYKG 2493
Query: 368 NSDKIIESNKVK 379
NS+K ++ K K
Sbjct: 2494 NSEKNVKIEKNK 2505
>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 30.0 bits (66), Expect = 3.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 308 HNKERGSFITSEEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEFGFSREEIYQL 367
H++E G ++ P A N A ++D +G+ + +L E FS+ +IY+
Sbjct: 2437 HDRESGEEKQEHLTEMDPFYAE---NFMANTYLRKDRHLGKSEDVLLGETFFSKSQIYKG 2493
Query: 368 NSDKIIESNKVK 379
NS+K ++ K K
Sbjct: 2494 NSEKNVKIEKNK 2505
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 30.0 bits (66), Expect = 3.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 308 HNKERGSFITSEEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEFGFSREEIYQL 367
H++E G ++ P A N A ++D +G+ + +L E FS+ +IY+
Sbjct: 2437 HDRESGEEKQEHLTEMDPFYAE---NFMANTYLRKDRHLGKSEDVLLGETFFSKSQIYKG 2493
Query: 368 NSDKIIESNKVK 379
NS+K ++ K K
Sbjct: 2494 NSEKNVKIEKNK 2505
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 29.6 bits (65), Expect = 4.7
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 313 GSFITS--EEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEFG--FSREEIYQL 367
G +IT E+ DV + L+LNTP+ PS D F+ ++L++ G + RE I +L
Sbjct: 4681 GLYITEQPEDDDVKGQWDRLVLNTPSFPSNYWDKFV---KRKVLDKHGDIYGRERIAEL 4736
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 29.6 bits (65), Expect = 4.7
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 313 GSFITS--EEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEFG--FSREEIYQL 367
G +IT E+ DV + L+LNTP+ PS D F+ ++L++ G + RE I +L
Sbjct: 4686 GLYITEQPEDDDVKGQWDRLVLNTPSFPSNYWDKFV---KRKVLDKHGDIYGRERIAEL 4741
>gi|39204547 testis spermatogenesis apoptosis-related protein 6
[Homo sapiens]
Length = 316
Score = 29.3 bits (64), Expect = 6.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 55 LDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEK 87
L +P A + R++ + DVL +P +RG+ +K
Sbjct: 34 LKSNEPSSAEIFRQIAEAYDVLSDPMKRGIYDK 66
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,991,552
Number of Sequences: 37866
Number of extensions: 714138
Number of successful extensions: 1304
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 12
length of query: 382
length of database: 18,247,518
effective HSP length: 104
effective length of query: 278
effective length of database: 14,309,454
effective search space: 3978028212
effective search space used: 3978028212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.