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Search of human proteins with 41872403
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41872403 flavin adenine dinucleotide synthetase isoform 2
[Homo sapiens]
(490 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41872403 flavin adenine dinucleotide synthetase isoform 2 [Ho... 994 0.0
gi|41872389 flavin adenine dinucleotide synthetase isoform 1 [Ho... 994 0.0
gi|169234778 potassium channel tetramerisation domain containing... 33 0.59
gi|32698700 PHD finger protein 8 [Homo sapiens] 32 1.3
gi|10880983 gephyrin isoform 1 [Homo sapiens] 32 1.7
gi|66932975 gephyrin isoform 2 [Homo sapiens] 32 1.7
gi|4505331 N-ethylmaleimide-sensitive factor attachment protein,... 29 8.5
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 29 8.5
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 29 8.5
>gi|41872403 flavin adenine dinucleotide synthetase isoform 2 [Homo
sapiens]
Length = 490
Score = 994 bits (2570), Expect = 0.0
Identities = 490/490 (100%), Positives = 490/490 (100%)
Query: 1 MTSRASELSPGRSVTAGIIIVGDEILKGHTQDTNTFFLCRTLRSLGVQVCRVSVVPDEVA 60
MTSRASELSPGRSVTAGIIIVGDEILKGHTQDTNTFFLCRTLRSLGVQVCRVSVVPDEVA
Sbjct: 1 MTSRASELSPGRSVTAGIIIVGDEILKGHTQDTNTFFLCRTLRSLGVQVCRVSVVPDEVA 60
Query: 61 TIAAEVTSFSNRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPKLEAATKALGGEGW 120
TIAAEVTSFSNRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPKLEAATKALGGEGW
Sbjct: 61 TIAAEVTSFSNRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPKLEAATKALGGEGW 120
Query: 121 EKLSLVPSSARLHYGTDPCTGQPFRFPLVSVRNVYLFPGIPELLRRVLEGMKGLFQNPAV 180
EKLSLVPSSARLHYGTDPCTGQPFRFPLVSVRNVYLFPGIPELLRRVLEGMKGLFQNPAV
Sbjct: 121 EKLSLVPSSARLHYGTDPCTGQPFRFPLVSVRNVYLFPGIPELLRRVLEGMKGLFQNPAV 180
Query: 181 QFHSKELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 240
QFHSKELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE
Sbjct: 181 QFHSKELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 240
Query: 241 CLAYLTARLPQGSLVPYMPNAVEQASEAVYKLAESGSSLGKKVAGALQTIETSLAQYSLT 300
CLAYLTARLPQGSLVPYMPNAVEQASEAVYKLAESGSSLGKKVAGALQTIETSLAQYSLT
Sbjct: 241 CLAYLTARLPQGSLVPYMPNAVEQASEAVYKLAESGSSLGKKVAGALQTIETSLAQYSLT 300
Query: 301 QLCVGFNGGKDCTALLHLFHAAVQRKLPDVPNPLQILYIRSISPFPELEQFLQDTIKRYN 360
QLCVGFNGGKDCTALLHLFHAAVQRKLPDVPNPLQILYIRSISPFPELEQFLQDTIKRYN
Sbjct: 301 QLCVGFNGGKDCTALLHLFHAAVQRKLPDVPNPLQILYIRSISPFPELEQFLQDTIKRYN 360
Query: 361 LQMLEAEGSMKQALGELQARHPQLEAVLMGTRRTDPYSCSLCPFSPTDPGWPAFMRINPL 420
LQMLEAEGSMKQALGELQARHPQLEAVLMGTRRTDPYSCSLCPFSPTDPGWPAFMRINPL
Sbjct: 361 LQMLEAEGSMKQALGELQARHPQLEAVLMGTRRTDPYSCSLCPFSPTDPGWPAFMRINPL 420
Query: 421 LDWTYRDIWDFLRQLFVPYCILYDRGYTSLGSRENTVRNPALKCLSPGGHPTYRPAYLLE 480
LDWTYRDIWDFLRQLFVPYCILYDRGYTSLGSRENTVRNPALKCLSPGGHPTYRPAYLLE
Sbjct: 421 LDWTYRDIWDFLRQLFVPYCILYDRGYTSLGSRENTVRNPALKCLSPGGHPTYRPAYLLE 480
Query: 481 NEEEERNSRT 490
NEEEERNSRT
Sbjct: 481 NEEEERNSRT 490
>gi|41872389 flavin adenine dinucleotide synthetase isoform 1 [Homo
sapiens]
Length = 587
Score = 994 bits (2570), Expect = 0.0
Identities = 490/490 (100%), Positives = 490/490 (100%)
Query: 1 MTSRASELSPGRSVTAGIIIVGDEILKGHTQDTNTFFLCRTLRSLGVQVCRVSVVPDEVA 60
MTSRASELSPGRSVTAGIIIVGDEILKGHTQDTNTFFLCRTLRSLGVQVCRVSVVPDEVA
Sbjct: 98 MTSRASELSPGRSVTAGIIIVGDEILKGHTQDTNTFFLCRTLRSLGVQVCRVSVVPDEVA 157
Query: 61 TIAAEVTSFSNRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPKLEAATKALGGEGW 120
TIAAEVTSFSNRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPKLEAATKALGGEGW
Sbjct: 158 TIAAEVTSFSNRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPKLEAATKALGGEGW 217
Query: 121 EKLSLVPSSARLHYGTDPCTGQPFRFPLVSVRNVYLFPGIPELLRRVLEGMKGLFQNPAV 180
EKLSLVPSSARLHYGTDPCTGQPFRFPLVSVRNVYLFPGIPELLRRVLEGMKGLFQNPAV
Sbjct: 218 EKLSLVPSSARLHYGTDPCTGQPFRFPLVSVRNVYLFPGIPELLRRVLEGMKGLFQNPAV 277
Query: 181 QFHSKELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 240
QFHSKELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE
Sbjct: 278 QFHSKELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 337
Query: 241 CLAYLTARLPQGSLVPYMPNAVEQASEAVYKLAESGSSLGKKVAGALQTIETSLAQYSLT 300
CLAYLTARLPQGSLVPYMPNAVEQASEAVYKLAESGSSLGKKVAGALQTIETSLAQYSLT
Sbjct: 338 CLAYLTARLPQGSLVPYMPNAVEQASEAVYKLAESGSSLGKKVAGALQTIETSLAQYSLT 397
Query: 301 QLCVGFNGGKDCTALLHLFHAAVQRKLPDVPNPLQILYIRSISPFPELEQFLQDTIKRYN 360
QLCVGFNGGKDCTALLHLFHAAVQRKLPDVPNPLQILYIRSISPFPELEQFLQDTIKRYN
Sbjct: 398 QLCVGFNGGKDCTALLHLFHAAVQRKLPDVPNPLQILYIRSISPFPELEQFLQDTIKRYN 457
Query: 361 LQMLEAEGSMKQALGELQARHPQLEAVLMGTRRTDPYSCSLCPFSPTDPGWPAFMRINPL 420
LQMLEAEGSMKQALGELQARHPQLEAVLMGTRRTDPYSCSLCPFSPTDPGWPAFMRINPL
Sbjct: 458 LQMLEAEGSMKQALGELQARHPQLEAVLMGTRRTDPYSCSLCPFSPTDPGWPAFMRINPL 517
Query: 421 LDWTYRDIWDFLRQLFVPYCILYDRGYTSLGSRENTVRNPALKCLSPGGHPTYRPAYLLE 480
LDWTYRDIWDFLRQLFVPYCILYDRGYTSLGSRENTVRNPALKCLSPGGHPTYRPAYLLE
Sbjct: 518 LDWTYRDIWDFLRQLFVPYCILYDRGYTSLGSRENTVRNPALKCLSPGGHPTYRPAYLLE 577
Query: 481 NEEEERNSRT 490
NEEEERNSRT
Sbjct: 578 NEEEERNSRT 587
>gi|169234778 potassium channel tetramerisation domain containing 17
[Homo sapiens]
Length = 297
Score = 33.1 bits (74), Expect = 0.59
Identities = 47/205 (22%), Positives = 75/205 (36%), Gaps = 32/205 (15%)
Query: 227 KLTLDSE--EEGPLEECLAYLTARLPQGSLVPYMPNAVEQASEAVYKLAESGSSLGKKVA 284
KL LD + EEG LEE Y G L+ + + +E+ V ++ K V
Sbjct: 96 KLVLDKDMAEEGVLEEAEFYNI-----GPLIRIIKDRMEEKDYTVTQVPP------KHVY 144
Query: 285 GALQTIETSLAQY-----------SLTQLCVGFNGGKDCTALLHLFHAAVQRKLPDVPNP 333
LQ E L Q L + +N G + A F V ++L PN
Sbjct: 145 RVLQCQEEELTQMVSTMSDGWRFEQLVNIGSSYNYGSEDQAE---FLCVVSKELHSTPNG 201
Query: 334 LQILYIRSISPFPEL---EQFLQDTIKRYNLQMLEAEGSMKQALGELQARHPQLEAVLMG 390
L R E +Q ++ ++ ++ ++ E ++ P+ E +
Sbjct: 202 LSSESSRKTKSTEEQLEEQQQQEEEVEEVEVEQVQVEADAQEKGSRPHPLRPEAELAVRA 261
Query: 391 TRR--TDPYSCSLCPFSPTDPGWPA 413
+ R P SC C + P PG A
Sbjct: 262 SPRPLARPQSCHPCCYKPEAPGCEA 286
>gi|32698700 PHD finger protein 8 [Homo sapiens]
Length = 1024
Score = 32.0 bits (71), Expect = 1.3
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 444 DRGYTSLGSRENTVRNPALKCLSPGGHPTYRPAY-LLENEEEERNS 488
DR S S TV N +PG P RPAY E+EEEE N+
Sbjct: 752 DRSSGSSSSGLGTVSNSPASQRTPGKRPIKRPAYWRTESEEEEENA 797
>gi|10880983 gephyrin isoform 1 [Homo sapiens]
Length = 769
Score = 31.6 bits (70), Expect = 1.7
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 14 VTAGIIIVGDEILKGHTQDTNTFFLCRTLRS---LGVQVCRVSVVPDEVATIAAEVTSFS 70
+ G++ V D + +D + L ++ LG + +VPDE+ I + +
Sbjct: 15 IRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWC 74
Query: 71 NR--FTHVLTAGGIGPTHDDVTFEAVAQAFGDE 101
+ +LT GG G DVT EA + E
Sbjct: 75 DEKELNLILTTGGTGFAPRDVTPEATKEVIERE 107
>gi|66932975 gephyrin isoform 2 [Homo sapiens]
Length = 736
Score = 31.6 bits (70), Expect = 1.7
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 14 VTAGIIIVGDEILKGHTQDTNTFFLCRTLRS---LGVQVCRVSVVPDEVATIAAEVTSFS 70
+ G++ V D + +D + L ++ LG + +VPDE+ I + +
Sbjct: 15 IRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWC 74
Query: 71 NR--FTHVLTAGGIGPTHDDVTFEAVAQAFGDE 101
+ +LT GG G DVT EA + E
Sbjct: 75 DEKELNLILTTGGTGFAPRDVTPEATKEVIERE 107
>gi|4505331 N-ethylmaleimide-sensitive factor attachment protein,
gamma [Homo sapiens]
Length = 312
Score = 29.3 bits (64), Expect = 8.5
Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 24/149 (16%)
Query: 264 QASEAVYKLAESGSSLGKKVAGALQTIETSLAQYSLTQLCV-------GFNGGKDCTALL 316
Q + +YK E+ + KK + + Y + CV GFNG +DC AL
Sbjct: 178 QKEKNIYKEIENYPTCYKKTIAQV-LVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALE 236
Query: 317 HLFHAAVQR---KLPDVPNPLQILYIRSISPFPELEQFLQDTIKRYNLQMLEAEGSMKQA 373
L Q+ ++ DV N SP L +++ + + L ++ G +K+
Sbjct: 237 QLLEGYDQQDQDQVSDVCN----------SP---LFKYMDNDYAKLGLSLVVPGGGIKKK 283
Query: 374 LGELQARHPQLEAVLMGTRRTDPYSCSLC 402
P D YS LC
Sbjct: 284 SPATPQAKPDGVTATAADEEEDEYSGGLC 312
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 29.3 bits (64), Expect = 8.5
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 324 QRKLPDVPNPLQILYIRSISPFPELEQFLQDTIKRYNLQMLEAEGSMKQALGELQ----- 378
++K+ ++ + LQ+L +S P PEL + L + K ++ ++ S Q L ELQ
Sbjct: 5816 EKKIKELKSRLQVLKAQSEDPLPELHEDLHNE-KELIKELEQSLASWTQNLKELQTMKAD 5874
Query: 379 -ARHPQLEAVLM 389
RH +E V++
Sbjct: 5875 LTRHVLVEDVMV 5886
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 29.3 bits (64), Expect = 8.5
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 324 QRKLPDVPNPLQILYIRSISPFPELEQFLQDTIKRYNLQMLEAEGSMKQALGELQ----- 378
++K+ ++ + LQ+L +S P PEL + L + K ++ ++ S Q L ELQ
Sbjct: 5816 EKKIKELKSRLQVLKAQSEDPLPELHEDLHNE-KELIKELEQSLASWTQNLKELQTMKAD 5874
Query: 379 -ARHPQLEAVLM 389
RH +E V++
Sbjct: 5875 LTRHVLVEDVMV 5886
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,501,403
Number of Sequences: 37866
Number of extensions: 891426
Number of successful extensions: 2080
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2075
Number of HSP's gapped (non-prelim): 11
length of query: 490
length of database: 18,247,518
effective HSP length: 106
effective length of query: 384
effective length of database: 14,233,722
effective search space: 5465749248
effective search space used: 5465749248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.