Search of human proteins with 41352700

Search of human proteins with 41352700

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41352700 mitochondrial tryptophanyl tRNA synthetase 2
isoform 2 precursor [Homo sapiens]
         (220 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41352700 mitochondrial tryptophanyl tRNA synthetase 2 isoform...   442   e-124
gi|7710154 mitochondrial tryptophanyl tRNA synthetase 2 isoform ...   425   e-119
gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo...    34   0.086
gi|62945417 dystrophia myotonica-containing WD repeat motif prot...    30   1.2  
gi|23397456 IQ motif containing K [Homo sapiens]                       30   1.2  
gi|203097724 cadherin-like 29 [Homo sapiens]                           28   4.7  
gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo...    28   8.0  
gi|31317274 WD repeat domain 20 isoform 1 [Homo sapiens]               28   8.0  
gi|31317280 WD repeat domain 20 isoform 2 [Homo sapiens]               28   8.0  

>gi|41352700 mitochondrial tryptophanyl tRNA synthetase 2 isoform 2
           precursor [Homo sapiens]
          Length = 220

 Score =  442 bits (1137), Expect = e-124
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV 60
           MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV
Sbjct: 1   MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV 60

Query: 61  RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 120
           RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH
Sbjct: 61  RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 120

Query: 121 TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE 180
           TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE
Sbjct: 121 TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE 180

Query: 181 DQVQHMELVQDLAQGFNKKYGEFFPVPESILSMCVLVFLT 220
           DQVQHMELVQDLAQGFNKKYGEFFPVPESILSMCVLVFLT
Sbjct: 181 DQVQHMELVQDLAQGFNKKYGEFFPVPESILSMCVLVFLT 220


>gi|7710154 mitochondrial tryptophanyl tRNA synthetase 2 isoform 1
           precursor [Homo sapiens]
          Length = 360

 Score =  425 bits (1093), Expect = e-119
 Identities = 211/212 (99%), Positives = 212/212 (100%)

Query: 1   MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV 60
           MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV
Sbjct: 1   MALHSMRKARERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWV 60

Query: 61  RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 120
           RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH
Sbjct: 61  RLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILDMTAVLLACGINPEKSILFQQSQVSEH 120

Query: 121 TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE 180
           TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE
Sbjct: 121 TQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYPVLQAADILLYKSTHVPVGE 180

Query: 181 DQVQHMELVQDLAQGFNKKYGEFFPVPESILS 212
           DQVQHMELVQDLAQGFNKKYGEFFPVPESIL+
Sbjct: 181 DQVQHMELVQDLAQGFNKKYGEFFPVPESILT 212


>gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo
           sapiens]
          Length = 1297

 Score = 34.3 bits (77), Expect = 0.086
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 110 ILFQQSQVSEHTQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYP 161
           I+  Q+     + L W+LSC+  L R Q L  W    T Q + G +    +P
Sbjct: 197 IMSAQASSGSTSVLRWVLSCLATLLRKQDLEAWGYPVTLQVYHGLLSFTVHP 248


>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
           [Homo sapiens]
          Length = 674

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 10  RERWSFIRALHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWVRLQDEYDSV 69
           RE + +     +GS  +  L K   KR++ G QPT   H  N   A    + L   + + 
Sbjct: 132 RELYFYPGCCRRGSQRSIDLNKPIDKRIYKGTQPT--CHDFNQFTAATETISLLVGFSAG 189

Query: 70  LYSIVDLHSITVPQDPAVL--RQSILDMTAVLLACGINPEKSILFQQSQVSEHTQL 123
               +DL    + +D + L   + ++D T V     + PE   LF  S  S H  L
Sbjct: 190 QVQYLDL----IKKDTSKLFNEERLIDKTKVTYLKWL-PESESLFLASHASGHLYL 240


>gi|23397456 IQ motif containing K [Homo sapiens]
          Length = 287

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 109 SILFQQSQVSEHTQLSWILSCMVRL-PRLQHLHQWKAKTTKQKH 151
           S+L  + + + + Q  W  +C+VR  P +Q L QW+ K  + KH
Sbjct: 210 SLLLTEEEAALYIQSFW-RACVVRCDPEIQELRQWQKKLREAKH 252


>gi|203097724 cadherin-like 29 [Homo sapiens]
          Length = 788

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 148 KQKHDGTVGLLTYPVLQAADILLYKSTHVPVGEDQVQHMELVQDLAQGFNKKYGEFFPVP 207
           +Q   G V +   PV  +    L ++ ++ + E+     E+VQ  A+G + +Y    PVP
Sbjct: 215 RQSCQGMVIVKVLPVPSSQVSFLEQAQNITIPENLAPGSEVVQVQARGVDLRYEILSPVP 274

Query: 208 ESILSM 213
             + S+
Sbjct: 275 SPLFSI 280


>gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo
           sapiens]
          Length = 1236

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 114 QSQVSEHTQLSW----ILSCMVRLPRLQHLHQWKAKTTKQKHDGTVGLLTYP 161
           +SQ  + T+  +    +LSC+  L R Q L  W    T Q + G +    +P
Sbjct: 136 RSQGGKETETEYFAALVLSCLATLLRKQDLEAWGYPVTLQVYHGLLSFTVHP 187


>gi|31317274 WD repeat domain 20 isoform 1 [Homo sapiens]
          Length = 581

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 19  LHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWVRLQDEYDSVLYSIVD 75
           ++KG   A  L K   KR++ G QPT   H  N+L A    V L   + +    ++D
Sbjct: 77  IYKGVRKAADLSKPIDKRIYKGTQPT--CHDFNHLTATAESVSLLVGFSAGQVQLID 131


>gi|31317280 WD repeat domain 20 isoform 2 [Homo sapiens]
          Length = 569

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 19  LHKGSAAAPALQKDSKKRVFSGIQPTGILHLGNYLGAIESWVRLQDEYDSVLYSIVD 75
           ++KG   A  L K   KR++ G QPT   H  N+L A    V L   + +    ++D
Sbjct: 77  IYKGVRKAADLSKPIDKRIYKGTQPT--CHDFNHLTATAESVSLLVGFSAGQVQLID 131


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,381,352
Number of Sequences: 37866
Number of extensions: 349313
Number of successful extensions: 709
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 705
Number of HSP's gapped (non-prelim): 9
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.