Search of human proteins with 41350216

Search of human proteins with 41350216

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41350216 beta-1,4-mannosyltransferase [Homo sapiens]
         (464 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41350216 beta-1,4-mannosyltransferase [Homo sapiens]               959   0.0  
gi|239755575 PREDICTED: similar to mannosyltransferase, partial ...   476   e-134
gi|209954680 hypothetical protein LOC644974 [Homo sapiens]            357   1e-98
gi|62632744 asparagine-linked glycosylation 1-like [Homo sapiens]     263   2e-70
gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]    31   2.1  
gi|31542980 interferon-induced protein with tetratricopeptide re...    30   3.6  
gi|72534658 interferon-induced protein with tetratricopeptide re...    30   3.6  
gi|6912538 neurotensin receptor 2 [Homo sapiens]                       30   4.6  
gi|19923729 leucine rich repeat containing 8 family, member C [H...    29   7.9  
gi|31377468 dedicator of cytokinesis 2 [Homo sapiens]                  29   7.9  

>gi|41350216 beta-1,4-mannosyltransferase [Homo sapiens]
          Length = 464

 Score =  959 bits (2479), Expect = 0.0
 Identities = 464/464 (100%), Positives = 464/464 (100%)

Query: 1   MAASCLVLLALCLLLPLLLLGGWKRWRRGRAARHVVAVVLGDVGRSPRMQYHALSLAMHG 60
           MAASCLVLLALCLLLPLLLLGGWKRWRRGRAARHVVAVVLGDVGRSPRMQYHALSLAMHG
Sbjct: 1   MAASCLVLLALCLLLPLLLLGGWKRWRRGRAARHVVAVVLGDVGRSPRMQYHALSLAMHG 60

Query: 61  FSVTLLGFCNSKPHDELLQNNRIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMW 120
           FSVTLLGFCNSKPHDELLQNNRIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMW
Sbjct: 61  FSVTLLGFCNSKPHDELLQNNRIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMW 120

Query: 121 REPGAYIFLQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKW 180
           REPGAYIFLQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKW
Sbjct: 121 REPGAYIFLQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKW 180

Query: 181 YEKFFGRLSHLNLCVTNAMREDLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSM 240
           YEKFFGRLSHLNLCVTNAMREDLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSM
Sbjct: 181 YEKFFGRLSHLNLCVTNAMREDLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSM 240

Query: 241 HSPFRARSEPEDPVTERSAFTERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALE 300
           HSPFRARSEPEDPVTERSAFTERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALE
Sbjct: 241 HSPFRARSEPEDPVTERSAFTERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALE 300

Query: 301 KFEQLTLDGHNLPSLVCVITGKGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSA 360
           KFEQLTLDGHNLPSLVCVITGKGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSA
Sbjct: 301 KFEQLTLDGHNLPSLVCVITGKGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSA 360

Query: 361 DLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQL 420
           DLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQL
Sbjct: 361 DLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQL 420

Query: 421 QMLFSNFPDPAGKLNQFRKNLRESQQLRWDESWVQTVLPLVMDT 464
           QMLFSNFPDPAGKLNQFRKNLRESQQLRWDESWVQTVLPLVMDT
Sbjct: 421 QMLFSNFPDPAGKLNQFRKNLRESQQLRWDESWVQTVLPLVMDT 464


>gi|239755575 PREDICTED: similar to mannosyltransferase, partial
           [Homo sapiens]
          Length = 256

 Score =  476 bits (1226), Expect = e-134
 Identities = 232/255 (90%), Positives = 238/255 (93%)

Query: 210 RAVTVYDKPASFFKETPLDLQHRLFMKLGSMHSPFRARSEPEDPVTERSAFTERDAGSGL 269
           RAVT+YDKPASFFKETPLDLQHRLFMKLG  HSPFRARSEPE+P TE SAF E DAGSGL
Sbjct: 2   RAVTIYDKPASFFKETPLDLQHRLFMKLGGTHSPFRARSEPEEPATEPSAFMEWDAGSGL 61

Query: 270 VTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITGKGPLREYY 329
           V  LRE+PALLVSST WTEDEDFSILLAALEKFEQLT+DGHNLPSLVCVITG+GPL EYY
Sbjct: 62  VMLLREQPALLVSSTGWTEDEDFSILLAALEKFEQLTVDGHNLPSLVCVITGQGPLTEYY 121

Query: 330 SRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCCLPV 389
           S  IHQKHFQHIQVC PWLEAEDYPLLLGS DLGVCLHTSSSGLDLPMKVVDMFGCCLP 
Sbjct: 122 SCPIHQKHFQHIQVCNPWLEAEDYPLLLGSVDLGVCLHTSSSGLDLPMKVVDMFGCCLPA 181

Query: 390 CAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRESQQLRW 449
           CAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRESQQLRW
Sbjct: 182 CAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRESQQLRW 241

Query: 450 DESWVQTVLPLVMDT 464
           DE WVQ+VL LVMDT
Sbjct: 242 DERWVQSVLHLVMDT 256


>gi|209954680 hypothetical protein LOC644974 [Homo sapiens]
          Length = 215

 Score =  357 bits (916), Expect = 1e-98
 Identities = 181/217 (83%), Positives = 182/217 (83%), Gaps = 13/217 (5%)

Query: 211 AVTVYDKPASFFKETPLDLQHRLFMKLGSMHSPFRARSEPEDPVTERSAFTERDAGSGLV 270
           AVTVYDKPASFFKE PLDLQHRLFMKLGS HSPFRARSEPEDP TERSAFTERD+GSGLV
Sbjct: 8   AVTVYDKPASFFKEAPLDLQHRLFMKLGSTHSPFRARSEPEDPDTERSAFTERDSGSGLV 67

Query: 271 TRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITGKGPLREYYS 330
           TRL ERPALLVSSTSWTE             FEQLTLDG NLPSLVCVITGKGPLREYYS
Sbjct: 68  TRLHERPALLVSSTSWTE-------------FEQLTLDGQNLPSLVCVITGKGPLREYYS 114

Query: 331 RLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCCLPVC 390
           RLIHQKHFQHIQVC PWLE    P LLGS DL VCL TSSSGLDLPMKVVDMF CCLP C
Sbjct: 115 RLIHQKHFQHIQVCIPWLEGRGLPPLLGSVDLDVCLDTSSSGLDLPMKVVDMFRCCLPAC 174

Query: 391 AVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNF 427
           AVNFKCLHELVKHEEN LVFEDSEELAAQLQ     F
Sbjct: 175 AVNFKCLHELVKHEENRLVFEDSEELAAQLQYFADAF 211


>gi|62632744 asparagine-linked glycosylation 1-like [Homo sapiens]
          Length = 187

 Score =  263 bits (673), Expect = 2e-70
 Identities = 146/208 (70%), Positives = 147/208 (70%), Gaps = 51/208 (24%)

Query: 256 ERSAFTERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSL 315
           ERSAF E DAGS LV  LRE PALLVSST WTE             FEQLTLDGHNLPSL
Sbjct: 2   ERSAFMELDAGSRLVMHLREWPALLVSSTGWTE-------------FEQLTLDGHNLPSL 48

Query: 316 VCVITGKGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDL 375
           VCVITG                                     S DLGVCLH SSSGLDL
Sbjct: 49  VCVITG-------------------------------------SVDLGVCLHMSSSGLDL 71

Query: 376 PMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLN 435
           PMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAA LQMLFSNFPDPAGKLN
Sbjct: 72  PMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAA-LQMLFSNFPDPAGKLN 130

Query: 436 QFRKNLRESQQLRWDESWVQTVLPLVMD 463
           QF K+LRESQQLRWDESWVQTVLPLVMD
Sbjct: 131 QFWKDLRESQQLRWDESWVQTVLPLVMD 158


>gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]
          Length = 431

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 365 CLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLV 409
           CLHT+ +   LP+ +    G C  + ++ ++   E V   E GLV
Sbjct: 333 CLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLV 377


>gi|31542980 interferon-induced protein with tetratricopeptide
           repeats 3 [Homo sapiens]
          Length = 490

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 158 NYGYSIMGLVHGPNHPLVLLAKWYEKFFGRL 188
           NY Y + GL+H  N  L+  AK YEK  GRL
Sbjct: 416 NYWY-LQGLIHKQNGDLLQAAKCYEKELGRL 445


>gi|72534658 interferon-induced protein with tetratricopeptide
           repeats 3 [Homo sapiens]
          Length = 490

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 158 NYGYSIMGLVHGPNHPLVLLAKWYEKFFGRL 188
           NY Y + GL+H  N  L+  AK YEK  GRL
Sbjct: 416 NYWY-LQGLIHKQNGDLLQAAKCYEKELGRL 445


>gi|6912538 neurotensin receptor 2 [Homo sapiens]
          Length = 410

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 26 WRRGRA--ARHVVAVVLGDVGRSPRMQYHALSLAMHGFSVTLLG 67
          W  G A  A  V  V+    GR+ R+++H LSLA+ G  + L+G
Sbjct: 43 WALGAAGNALSVHVVLKARAGRAGRLRHHVLSLALAGLLLLLVG 86


>gi|19923729 leucine rich repeat containing 8 family, member C [Homo
           sapiens]
          Length = 803

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 19/76 (25%), Positives = 31/76 (40%)

Query: 373 LDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAG 432
           L + M ++ +FGC L V      CL + V+  +N     +  +  A    L    P PA 
Sbjct: 31  LSVAMLMIGVFGCTLQVMQDKIICLPKRVQPAQNHSSLSNVSQAVASTTPLPPPKPSPAN 90

Query: 433 KLNQFRKNLRESQQLR 448
            +    K L+    L+
Sbjct: 91  PITVEMKGLKTDLDLQ 106


>gi|31377468 dedicator of cytokinesis 2 [Homo sapiens]
          Length = 1830

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 308 DGHNLPSLVCVITGKGPLREYYSRLIHQ 335
           DG  LP+ +CV  G  P+ EY S + +Q
Sbjct: 456 DGKTLPNAICVGAGDKPMNEYRSVVYYQ 483


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.139    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,251,714
Number of Sequences: 37866
Number of extensions: 884362
Number of successful extensions: 2540
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2525
Number of HSP's gapped (non-prelim): 11
length of query: 464
length of database: 18,247,518
effective HSP length: 106
effective length of query: 358
effective length of database: 14,233,722
effective search space: 5095672476
effective search space used: 5095672476
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.