Search of human proteins with 41327694

Search of human proteins with 41327694

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41327694 RAB5-interacting protein isoform b [Homo sapiens]
         (143 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41327694 RAB5-interacting protein isoform b [Homo sapiens]         297   2e-81
gi|10047116 RAB5-interacting protein isoform a [Homo sapiens]         152   9e-38
gi|73747917 transporter 2, ATP-binding cassette, sub-family B is...    28   2.0  
gi|73747915 transporter 2, ATP-binding cassette, sub-family B is...    28   2.0  
gi|239753106 PREDICTED: similar to hCG1817845 [Homo sapiens]           28   3.4  
gi|4505167 N-acetylglucosaminyltransferase V [Homo sapiens]            27   7.6  
gi|215820619 zinc finger protein 646 [Homo sapiens]                    27   7.6  

>gi|41327694 RAB5-interacting protein isoform b [Homo sapiens]
          Length = 143

 Score =  297 bits (760), Expect = 2e-81
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW 60
           MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW
Sbjct: 1   MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW 60

Query: 61  GVLPLRGFLGIAGSFGSSFTLPSIMTDGVQLPSAPYPVQRTLLITAQELDRWGTPAPWNL 120
           GVLPLRGFLGIAGSFGSSFTLPSIMTDGVQLPSAPYPVQRTLLITAQELDRWGTPAPWNL
Sbjct: 61  GVLPLRGFLGIAGSFGSSFTLPSIMTDGVQLPSAPYPVQRTLLITAQELDRWGTPAPWNL 120

Query: 121 EDPCFLDRESVCWASVFSARVVT 143
           EDPCFLDRESVCWASVFSARVVT
Sbjct: 121 EDPCFLDRESVCWASVFSARVVT 143


>gi|10047116 RAB5-interacting protein isoform a [Homo sapiens]
          Length = 129

 Score =  152 bits (384), Expect = 9e-38
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 1  MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW 60
          MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW
Sbjct: 1  MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIW 60

Query: 61 GVLPLRGFLGIAG 73
          GVLPLRGFLGIAG
Sbjct: 61 GVLPLRGFLGIAG 73


>gi|73747917 transporter 2, ATP-binding cassette, sub-family B
          isoform 2 [Homo sapiens]
          Length = 653

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 56 LGVIWGVLPLRGFLGIAGS 74
          LG +WG+L LRG LG  G+
Sbjct: 46 LGGLWGLLKLRGLLGFVGT 64


>gi|73747915 transporter 2, ATP-binding cassette, sub-family B
          isoform 1 [Homo sapiens]
          Length = 703

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 56 LGVIWGVLPLRGFLGIAGS 74
          LG +WG+L LRG LG  G+
Sbjct: 46 LGGLWGLLKLRGLLGFVGT 64


>gi|239753106 PREDICTED: similar to hCG1817845 [Homo sapiens]
          Length = 1090

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 4   GRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVL 63
           G+   +PP+P LA GA+++   S VL    A   + +                 +I+ V 
Sbjct: 100 GKVDAKPPRPGLAAGAMELQELS-VLGHTGAPASRGQLGSAALSAHCPAVHPSALIYTVP 158

Query: 64  PLRGFLGIAGSFGSSFTLPSIMTDGVQLPSAPYPVQRTLLITAQELDRWGTPAPWNLEDP 123
            L+   G +G  G++F    ++T  +QL   P PV     +      R     PW+    
Sbjct: 159 ALQLHAGGSGGSGTAFDSSRLIT--LQLRWLPEPVS----VACPPEQRKSVDGPWSQSRA 212

Query: 124 CFLDR 128
            FL R
Sbjct: 213 IFLQR 217


>gi|4505167 N-acetylglucosaminyltransferase V [Homo sapiens]
          Length = 741

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)

Query: 24  VWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLG 57
           V+ KV   D+ W++K  +LD+I+ + ++ A V G
Sbjct: 451 VYGKV---DSFWKNKKIYLDIIHTYMEVHATVYG 481


>gi|215820619 zinc finger protein 646 [Homo sapiens]
          Length = 1832

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 4   GRRKEEPPQPQ-----LANGALKVSVWSKVLRSDAAWEDK 38
           GRR+  PP+P+     L    +    W + L S   WE++
Sbjct: 101 GRRRHRPPRPKEATPHLQGETVSTDSWGQRLGSSEGWENQ 140


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,146,495
Number of Sequences: 37866
Number of extensions: 266337
Number of successful extensions: 485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 7
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.