Guide to the Human Genome
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Name: C20orf24 Sequence: fasta or formatted (129aa) NCBI GI: 10047116
Description:

RAB5-interacting protein isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {143aa} RAB5-interacting protein isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0          9           2
 C cysteine            0.8          1           1
 D aspartate           4.7          6           1
 E glutamate           7.0          9           3
 F phenylalanine       7.0          9           1
 G glycine             9.3         12           2
 H histidine           0.8          1           1
 I isoleucine          8.5         11           2
 K lysine              3.9          5           1
 L leucine            10.9         14           1
 M methionine          2.3          3           1
 N asparagine          2.3          3           1
 P proline             3.1          4           2
 Q glutamine           3.1          4           1
 R arginine            3.9          5           2
 S serine              4.7          6           1
 T threonine           3.1          4           1
 V valine              7.8         10           2
 W tryptophan          4.7          6           1
 Y tyrosine            5.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB5-interacting protein isoform a 
C20orf24              0.518   RAB5-interacting protein isoform b 
IMPAD1                0.020   inositol monophosphatase domain containing 1 
TAP2                  0.016   transporter 2, ATP-binding cassette, sub-family B is...
TAP2                  0.016   transporter 2, ATP-binding cassette, sub-family B is...
TM9SF1                0.008   transmembrane 9 superfamily member 1 isoform a [Homo...
MFSD9                 0.008   major facilitator superfamily domain containing 9 [...
MGAT5                 0.008   N-acetylglucosaminyltransferase V 
ZNF646                0.008   zinc finger protein 646 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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