Search of human proteins with 40255060

Search of human proteins with 40255060

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40255060 cytochrome b5 domain containing 1 [Homo sapiens]
         (228 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40255060 cytochrome b5 domain containing 1 [Homo sapiens]          486   e-138
gi|83921614 cytochrome b5 outer mitochondrial membrane precursor...    39   0.004
gi|4503183 cytochrome b-5 isoform 2 [Homo sapiens]                     36   0.024
gi|41281768 cytochrome b-5 isoform 1 [Homo sapiens]                    36   0.024
gi|214831730 fatty acid desaturase 1 [Homo sapiens]                    32   0.34 
gi|84875541 cytochrome b5 reductase 4 [Homo sapiens]                   32   0.34 
gi|13375616 fatty acid desaturase 3 [Homo sapiens]                     31   0.77 
gi|205360949 fatty acid 2-hydroxylase [Homo sapiens]                   31   1.00 
gi|4758334 fatty acid desaturase 2 [Homo sapiens]                      28   5.0  
gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens]    28   6.5  
gi|112421122 DnaJ (Hsp40) homolog, subfamily C, member 13 [Homo ...    28   6.5  
gi|126032348 hect domain and RLD 2 [Homo sapiens]                      28   8.5  

>gi|40255060 cytochrome b5 domain containing 1 [Homo sapiens]
          Length = 228

 Score =  486 bits (1250), Expect = e-138
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MPRRGLVAGPDLEYFQRRYFTPAEVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKP 60
           MPRRGLVAGPDLEYFQRRYFTPAEVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKP
Sbjct: 1   MPRRGLVAGPDLEYFQRRYFTPAEVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKP 60

Query: 61  IVEVAGQDISHWFDPKTRDIRKHIDPLTGCLRYCTPRGRFVHVPPQLPCSDWANDFGKPW 120
           IVEVAGQDISHWFDPKTRDIRKHIDPLTGCLRYCTPRGRFVHVPPQLPCSDWANDFGKPW
Sbjct: 61  IVEVAGQDISHWFDPKTRDIRKHIDPLTGCLRYCTPRGRFVHVPPQLPCSDWANDFGKPW 120

Query: 121 WQGSYYEVGRLSAKTRSIRIINTLTSQEHTLEVGVLESIWEILHRYLPYNSHAASYTWKY 180
           WQGSYYEVGRLSAKTRSIRIINTLTSQEHTLEVGVLESIWEILHRYLPYNSHAASYTWKY
Sbjct: 121 WQGSYYEVGRLSAKTRSIRIINTLTSQEHTLEVGVLESIWEILHRYLPYNSHAASYTWKY 180

Query: 181 EGKNLNMDFTLEENGIRDEEEEFDYLSMDGTLHTPAILLYFNDDLTEL 228
           EGKNLNMDFTLEENGIRDEEEEFDYLSMDGTLHTPAILLYFNDDLTEL
Sbjct: 181 EGKNLNMDFTLEENGIRDEEEEFDYLSMDGTLHTPAILLYFNDDLTEL 228


>gi|83921614 cytochrome b5 outer mitochondrial membrane precursor
          [Homo sapiens]
          Length = 150

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 19 YFTPAEVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKPIVEVAGQDISHWFD 74
          Y+   EVA+ N  ++LW+   GRVYD+T    E+ G    + ++E AG D S  F+
Sbjct: 26 YYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGG--EEVLLEQAGVDASESFE 79


>gi|4503183 cytochrome b-5 isoform 2 [Homo sapiens]
          Length = 98

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 18 RYFTPAEVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKPIVEVAGQDISHWFD 74
          +Y+T  E+ +HN  +  W+    +VYDLT   +E+ G    + + E AG D +  F+
Sbjct: 10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGG--EEVLREQAGGDATENFE 64


>gi|41281768 cytochrome b-5 isoform 1 [Homo sapiens]
          Length = 134

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 18 RYFTPAEVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKPIVEVAGQDISHWFD 74
          +Y+T  E+ +HN  +  W+    +VYDLT   +E+ G    + + E AG D +  F+
Sbjct: 10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGG--EEVLREQAGGDATENFE 64


>gi|214831730 fatty acid desaturase 1 [Homo sapiens]
          Length = 501

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 18  RYFTPAEVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKPIVEVAGQDISHWF 73
           RYFT  EVAQ +  E+ W+    +VY+++   + + G    + I   AGQD +  F
Sbjct: 75  RYFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGG--SRVISHYAGQDATDPF 128


>gi|84875541 cytochrome b5 reductase 4 [Homo sapiens]
          Length = 521

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 8   AGPDLEYFQRRYF--TPAEVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKPIVEVA 65
           +G DL   + R    T  E+ +HN+ +D W+   G VY+++   + + G      ++  A
Sbjct: 43  SGKDLTGLKGRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGG--EDELMRAA 100

Query: 66  GQDISHWFD 74
           G D +  FD
Sbjct: 101 GSDGTELFD 109


>gi|13375616 fatty acid desaturase 3 [Homo sapiens]
          Length = 445

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 24 EVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKPIVEVAGQDISHWFDPKTRD---I 80
          ++  H++P D W+    RVYD++  AQ + G   L  I     +D +  F    +D   +
Sbjct: 27 QIRAHDQPGDKWLVIERRVYDISRWAQRHPGGSRL--IGHHGAEDATDAFRAFHQDLNFV 84

Query: 81 RKHIDPL 87
          RK + PL
Sbjct: 85 RKFLQPL 91


>gi|205360949 fatty acid 2-hydroxylase [Homo sapiens]
          Length = 372

 Score = 30.8 bits (68), Expect = 1.00
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 20 FTPAEVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKPIVEVAGQDIS 70
          F+P+EV +       WV    R+YDL+S  + + G   L  +   AGQDIS
Sbjct: 11 FSPSEVQRRLAAGACWVRRGARLYDLSSFVRHHPGGEQL--LRARAGQDIS 59


>gi|4758334 fatty acid desaturase 2 [Homo sapiens]
          Length = 444

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 20 FTPAEVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKPIVEVAGQDIS---HWFDPK 76
          F+  E+ +HN   D W+    +VY++T  + ++ G    + I   AG+D +     F P 
Sbjct: 21 FSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGG--QRVIGHYAGEDATDAFRAFHPD 78

Query: 77 TRDIRKHIDPL 87
             + K + PL
Sbjct: 79 LEFVGKFLKPL 89


>gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens]
          Length = 1162

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 157 ESIWEILHRYLPYNSHAASYTWKYEGKNLNMDFTLE--ENGIRDEE 200
           E  W +L RY+   ++ +  T +++ ++L+MD  L   E+G  DEE
Sbjct: 331 EMCWYVLERYVYCITNRSHLTKEFQKESLSMDLELNGLESGNGDEE 376


>gi|112421122 DnaJ (Hsp40) homolog, subfamily C, member 13 [Homo
            sapiens]
          Length = 2243

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 174  ASYTWKYEGKNLNMDFTLEENGIRDEEE 201
            A   W   G   N D+TLEE+GI+  EE
Sbjct: 1541 AGILWYLLGFLFNYDYTLEESGIQKSEE 1568


>gi|126032348 hect domain and RLD 2 [Homo sapiens]
          Length = 4834

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 23   AEVAQHNRPEDLWVSYLGRVYDLTSL-AQEYKGNLLLKPIVEVAGQD 68
            A++  HN+    W    G+VYD+     Q   GN +L    + AG+D
Sbjct: 1213 ADLENHNKDGGFWTVIDGKVYDIKDFQTQSLTGNSIL---AQFAGED 1256


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,723,633
Number of Sequences: 37866
Number of extensions: 441413
Number of successful extensions: 778
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 13
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.