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Search of human proteins with 38570054
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38570054 LYR motif containing 4 [Homo sapiens]
(91 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38570054 LYR motif containing 4 [Homo sapiens] 178 7e-46
gi|115430227 LYR motif containing 5 [Homo sapiens] 35 0.017
gi|190194370 LYR motif containing 1 [Homo sapiens] 34 0.029
gi|190194368 LYR motif containing 1 [Homo sapiens] 34 0.029
gi|10092683 LYR motif containing 1 [Homo sapiens] 34 0.029
gi|10092689 LYR motif containing 2 [Homo sapiens] 31 0.25
gi|111038124 succinate dehydrogenase complex assembly factor 1 [... 30 0.55
gi|116008154 hypothetical protein LOC201229 [Homo sapiens] 29 0.72
gi|6274550 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9,... 27 2.7
gi|22749539 hypothetical protein LOC257169 [Homo sapiens] 27 2.7
gi|68348709 formin binding protein 1-like isoform 1 [Homo sapiens] 26 6.1
gi|41581463 formin binding protein 1-like isoform 2 [Homo sapiens] 26 6.1
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 26 7.9
>gi|38570054 LYR motif containing 4 [Homo sapiens]
Length = 91
Score = 178 bits (452), Expect = 7e-46
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60
MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK
Sbjct: 1 MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60
Query: 61 RDLGVIRRQVHIGQLYSTDKLIIENRDMPRT 91
RDLGVIRRQVHIGQLYSTDKLIIENRDMPRT
Sbjct: 61 RDLGVIRRQVHIGQLYSTDKLIIENRDMPRT 91
>gi|115430227 LYR motif containing 5 [Homo sapiens]
Length = 90
Score = 34.7 bits (78), Expect = 0.017
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 1 MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLV 56
MA S R +VL LY+ +L + + Y +R+++ F +NK+VK+P +I+ L+
Sbjct: 3 MANSLRGEVLKLYKNLLYLGRDYP--KGADYFKKRLKNIFLKNKDVKNPEKIKELI 56
>gi|190194370 LYR motif containing 1 [Homo sapiens]
Length = 122
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 1 MAASSRAQVLSLYRAMLRESKRFSAYN--------YRTYAVRRIRDAFRENKNVKDPVEI 52
M ++R +VL LYR++ R ++++ A + + Y + R FR+NKN+ D I
Sbjct: 1 MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
Query: 53 QTLVNK--AKRDLGV 65
+ +++ A+ ++G+
Sbjct: 61 KQCIDECTARIEIGL 75
>gi|190194368 LYR motif containing 1 [Homo sapiens]
Length = 122
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 1 MAASSRAQVLSLYRAMLRESKRFSAYN--------YRTYAVRRIRDAFRENKNVKDPVEI 52
M ++R +VL LYR++ R ++++ A + + Y + R FR+NKN+ D I
Sbjct: 1 MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
Query: 53 QTLVNK--AKRDLGV 65
+ +++ A+ ++G+
Sbjct: 61 KQCIDECTARIEIGL 75
>gi|10092683 LYR motif containing 1 [Homo sapiens]
Length = 122
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 1 MAASSRAQVLSLYRAMLRESKRFSAYN--------YRTYAVRRIRDAFRENKNVKDPVEI 52
M ++R +VL LYR++ R ++++ A + + Y + R FR+NKN+ D I
Sbjct: 1 MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
Query: 53 QTLVNK--AKRDLGV 65
+ +++ A+ ++G+
Sbjct: 61 KQCIDECTARIEIGL 75
>gi|10092689 LYR motif containing 2 [Homo sapiens]
Length = 88
Score = 30.8 bits (68), Expect = 0.25
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 6 RAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLGV 65
R QVL LYR +L+ ++ + R Y R+ FR NK+ + I+ ++ + L
Sbjct: 19 RQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATEEDTIRMMITQGNMQLKE 78
Query: 66 IRRQVHIGQ 74
+ + + + +
Sbjct: 79 LEKTLALAK 87
>gi|111038124 succinate dehydrogenase complex assembly factor 1
[Homo sapiens]
Length = 115
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 8 QVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNV--KDPVEIQTLVNKAKRDLGV 65
QVLSLYR +LR + + A R+R FR++ + D + I+ L + +R L +
Sbjct: 10 QVLSLYRDLLRAGRG------KPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQLQL 63
Query: 66 IR 67
+R
Sbjct: 64 LR 65
>gi|116008154 hypothetical protein LOC201229 [Homo sapiens]
Length = 78
Score = 29.3 bits (64), Expect = 0.72
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 10 LSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRD 62
L LYR +LR ++ + + +R +FR + + +P IQ ++ +A D
Sbjct: 14 LQLYRYLLRCCQQLPTKGIQQHYKHAVRQSFRVHSDEDNPERIQQIIKRAIED 66
>gi|6274550 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9,
22kDa [Homo sapiens]
Length = 179
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 8 QVLSLYRAMLR--ESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRD 62
+VL LY+ LR ES YR +A +R F E+KN KD + L+ +A+ +
Sbjct: 15 KVLRLYKRALRHLESWCVQRDKYRYFACL-MRARFEEHKNEKDMAKATQLLKEAEEE 70
>gi|22749539 hypothetical protein LOC257169 [Homo sapiens]
Length = 461
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 10 LSLYRAMLRESKRFSA-YNYRTYAVR----RIRDAFRENKNVKDPVEIQTLVNKAKRDLG 64
L+L R LR +R +N +T R R + ++ K VK P++ Q KAK D G
Sbjct: 266 LTLERPALRYPERLKKLHNLKTEGYRKQQQRQQQQQQQQKKVKTPIKKQEAKKKAKSDPG 325
Query: 65 V 65
+
Sbjct: 326 I 326
>gi|68348709 formin binding protein 1-like isoform 1 [Homo sapiens]
Length = 551
Score = 26.2 bits (56), Expect = 6.1
Identities = 8/48 (16%), Positives = 27/48 (56%)
Query: 32 AVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLGVIRRQVHIGQLYSTD 79
A+ +++D + +N + DP +Q + + ++ +R ++H + + ++
Sbjct: 369 ALNKMKDVYEKNPQMGDPGSLQPKLAETMNNIDRLRMEIHKNEAWLSE 416
>gi|41581463 formin binding protein 1-like isoform 2 [Homo sapiens]
Length = 547
Score = 26.2 bits (56), Expect = 6.1
Identities = 8/48 (16%), Positives = 27/48 (56%)
Query: 32 AVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLGVIRRQVHIGQLYSTD 79
A+ +++D + +N + DP +Q + + ++ +R ++H + + ++
Sbjct: 369 ALNKMKDVYEKNPQMGDPGSLQPKLAETMNNIDRLRMEIHKNEAWLSE 416
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 6 RAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVK 47
R+ +L YR++L E R YN Y +I +A R K ++
Sbjct: 225 RSDLLDQYRSLLVERNRSQRYN--LYLQHKIFEALRRKKGLE 264
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.134 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,568,199
Number of Sequences: 37866
Number of extensions: 77966
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 13
length of query: 91
length of database: 18,247,518
effective HSP length: 62
effective length of query: 29
effective length of database: 15,899,826
effective search space: 461094954
effective search space used: 461094954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.