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Search of human proteins with 124487382
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|124487382 COMM domain containing 5 [Homo sapiens]
(224 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|124487382 COMM domain containing 5 [Homo sapiens] 439 e-124
gi|154800418 COMM domain containing 5 [Homo sapiens] 439 e-124
gi|19923430 COMM domain containing 5 [Homo sapiens] 439 e-124
gi|169166962 PREDICTED: similar to COMM domain containing 5 [Hom... 378 e-105
gi|169166771 PREDICTED: similar to COMM domain containing 5 [Hom... 378 e-105
gi|169166418 PREDICTED: similar to COMM domain containing 5 [Hom... 378 e-105
gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens] 37 0.014
gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens] 37 0.014
gi|6912278 COMM domain containing 3 [Homo sapiens] 37 0.018
gi|45545435 COMM domain containing 2 [Homo sapiens] 35 0.068
gi|7706663 COMM domain containing 10 [Homo sapiens] 34 0.089
gi|5729986 processing of precursor 4 [Homo sapiens] 33 0.20
gi|41393583 EGF-like-domain, multiple 7 [Homo sapiens] 31 0.75
gi|7705889 EGF-like-domain, multiple 7 [Homo sapiens] 31 0.75
gi|45333909 COMM domain containing 6 isoform a [Homo sapiens] 28 4.9
gi|45333906 COMM domain containing 6 isoform b [Homo sapiens] 28 4.9
gi|118640870 ADP-ribosyltransferase 5 precursor [Homo sapiens] 28 4.9
gi|30089992 ADP-ribosyltransferase 5 precursor [Homo sapiens] 28 4.9
gi|8923458 COMM domain containing 8 [Homo sapiens] 28 4.9
gi|238859593 UDP-glucose ceramide glucosyltransferase-like 2 [Ho... 28 6.3
>gi|124487382 COMM domain containing 5 [Homo sapiens]
Length = 224
Score = 439 bits (1129), Expect = e-124
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ 60
MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ
Sbjct: 1 MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ 60
Query: 61 GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ 120
GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ
Sbjct: 61 GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ 120
Query: 121 DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL 180
DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL
Sbjct: 121 DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL 180
Query: 181 KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD
Sbjct: 181 KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
>gi|154800418 COMM domain containing 5 [Homo sapiens]
Length = 224
Score = 439 bits (1129), Expect = e-124
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ 60
MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ
Sbjct: 1 MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ 60
Query: 61 GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ 120
GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ
Sbjct: 61 GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ 120
Query: 121 DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL 180
DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL
Sbjct: 121 DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL 180
Query: 181 KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD
Sbjct: 181 KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
>gi|19923430 COMM domain containing 5 [Homo sapiens]
Length = 224
Score = 439 bits (1129), Expect = e-124
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ 60
MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ
Sbjct: 1 MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ 60
Query: 61 GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ 120
GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ
Sbjct: 61 GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ 120
Query: 121 DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL 180
DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL
Sbjct: 121 DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL 180
Query: 181 KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD
Sbjct: 181 KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
>gi|169166962 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 378 bits (970), Expect = e-105
Identities = 195/220 (88%), Positives = 201/220 (91%)
Query: 5 GAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQGEDC 64
G + LHHPG SHSGRVSFLGAQLPPEVAAM +LLGDL+RS FRKLLKFVVSSLQGEDC
Sbjct: 54 GGHSSVLHHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDC 113
Query: 65 REAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVG 124
REAVQ LGVS NLP+E LGALLAGMHTLLQQAL LPPTSLKP+TFRDQLQELCIPQDLVG
Sbjct: 114 REAVQCLGVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVG 173
Query: 125 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
DLASVVFGSQRPLLDSVAQQQGAWLPHVADF+W VDV ISTSALAR LQP VLMQLKLSD
Sbjct: 174 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233
Query: 185 GSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
G AYRFEVP AKFQELRYSVALVLKEMADLEKRCE LQD
Sbjct: 234 GLAYRFEVPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273
>gi|169166771 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 378 bits (970), Expect = e-105
Identities = 195/220 (88%), Positives = 201/220 (91%)
Query: 5 GAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQGEDC 64
G + LHHPG SHSGRVSFLGAQLPPEVAAM +LLGDL+RS FRKLLKFVVSSLQGEDC
Sbjct: 54 GGHSSVLHHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDC 113
Query: 65 REAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVG 124
REAVQ LGVS NLP+E LGALLAGMHTLLQQAL LPPTSLKP+TFRDQLQELCIPQDLVG
Sbjct: 114 REAVQCLGVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVG 173
Query: 125 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
DLASVVFGSQRPLLDSVAQQQGAWLPHVADF+W VDV ISTSALAR LQP VLMQLKLSD
Sbjct: 174 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233
Query: 185 GSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
G AYRFEVP AKFQELRYSVALVLKEMADLEKRCE LQD
Sbjct: 234 GLAYRFEVPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273
>gi|169166418 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 378 bits (970), Expect = e-105
Identities = 195/220 (88%), Positives = 201/220 (91%)
Query: 5 GAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQGEDC 64
G + LHHPG SHSGRVSFLGAQLPPEVAAM +LLGDL+RS FRKLLKFVVSSLQGEDC
Sbjct: 54 GGHSSVLHHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDC 113
Query: 65 REAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVG 124
REAVQ LGVS NLP+E LGALLAGMHTLLQQAL LPPTSLKP+TFRDQLQELCIPQDLVG
Sbjct: 114 REAVQCLGVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVG 173
Query: 125 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
DLASVVFGSQRPLLDSVAQQQGAWLPHVADF+W VDV ISTSALAR LQP VLMQLKLSD
Sbjct: 174 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233
Query: 185 GSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
G AYRFEVP AKFQELRYSVALVLKEMADLEKRCE LQD
Sbjct: 234 GLAYRFEVPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273
>gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens]
Length = 156
Score = 37.0 bits (84), Expect = 0.014
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 142 AQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
AQ LP + D WRVD+ S+ +++R P+ L+Q+K+ +
Sbjct: 71 AQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 113
>gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens]
Length = 198
Score = 37.0 bits (84), Expect = 0.014
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 142 AQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
AQ LP + D WRVD+ S+ +++R P+ L+Q+K+ +
Sbjct: 113 AQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 155
>gi|6912278 COMM domain containing 3 [Homo sapiens]
Length = 195
Score = 36.6 bits (83), Expect = 0.018
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 146 GAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKL--SDGSAYRFEVPTAKFQELRYS 203
G LPH+ D WR++ I T+ L R +P+ L+ L + +D +Y P F
Sbjct: 119 GRSLPHITDVSWRLEYQIKTNQLHRMYRPAYLVTLSVQNTDSPSY----PEISFSCSMEQ 174
Query: 204 VALVLKEMADLEKRCERRLQ 223
+ ++ ++ D K ER Q
Sbjct: 175 LQDLVGKLKDASKSLERATQ 194
>gi|45545435 COMM domain containing 2 [Homo sapiens]
Length = 199
Score = 34.7 bits (78), Expect = 0.068
Identities = 27/126 (21%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 67 AVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDL 126
A ++L VS++ + + G+ LL ++ +L + L F+D + L ++L L
Sbjct: 47 AARKLNVSSDTVQHGV----EGLTYLLTESSKLMISELD---FQDSVFVLGFSEEL-NKL 98
Query: 127 ASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSDGS 186
++ R + ++ + LP + WR+DV +++ +L + ++P+V ++L L+
Sbjct: 99 LLQLYLDNRKEIRTILSELAPSLPSYHNLEWRLDVQLASRSLRQQIKPAVTIKLHLNQNG 158
Query: 187 AYRFEV 192
+ +V
Sbjct: 159 DHNTKV 164
>gi|7706663 COMM domain containing 10 [Homo sapiens]
Length = 202
Score = 34.3 bits (77), Expect = 0.089
Identities = 32/171 (18%), Positives = 76/171 (44%), Gaps = 8/171 (4%)
Query: 31 PEVAAMARLLGDLDRSTFRKLLKFVVSSL----QGEDCREAVQRLGVSANLPEEQLGALL 86
P + L+ +D F +LL ++ L + E ++L + +L ++ L +L
Sbjct: 13 PSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVL 72
Query: 87 AGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASVVFGSQRPLLDSVAQQQG 146
+ +L+QA+ ++KP + QL+ + + QD + + ++ Q+
Sbjct: 73 ETISFILEQAVY---HNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRIL 129
Query: 147 AWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAYRFEVPTAKF 197
A + W++++ ++ SA A+ P ++QL +++ + E +F
Sbjct: 130 APCK-LETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNNEDSKSLEKVLVEF 179
>gi|5729986 processing of precursor 4 [Homo sapiens]
Length = 220
Score = 33.1 bits (74), Expect = 0.20
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 78 PEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASV 129
PE+Q +L +H L +Q +R + LKPDT +Q + DL G + SV
Sbjct: 91 PEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAIISV 142
>gi|41393583 EGF-like-domain, multiple 7 [Homo sapiens]
Length = 273
Score = 31.2 bits (69), Expect = 0.75
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 65 REAVQRLGVSANLPEEQLGALLAGMHTLLQQALR--LP-PTSLKPDTFR 110
+E VQRL +L EE+L +LA +H+L QAL LP P SL +F+
Sbjct: 197 KEEVQRLQSRVDLLEEKLQLVLAPLHSLASQALEHGLPDPGSLLVHSFQ 245
>gi|7705889 EGF-like-domain, multiple 7 [Homo sapiens]
Length = 273
Score = 31.2 bits (69), Expect = 0.75
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 65 REAVQRLGVSANLPEEQLGALLAGMHTLLQQALR--LP-PTSLKPDTFR 110
+E VQRL +L EE+L +LA +H+L QAL LP P SL +F+
Sbjct: 197 KEEVQRLQSRVDLLEEKLQLVLAPLHSLASQALEHGLPDPGSLLVHSFQ 245
>gi|45333909 COMM domain containing 6 isoform a [Homo sapiens]
Length = 98
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 152 VADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAY----RFEVPTAKFQ 198
+ DF+W++ +A+S+ P V + LK++D S FE+ +FQ
Sbjct: 19 LVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQ 69
>gi|45333906 COMM domain containing 6 isoform b [Homo sapiens]
Length = 85
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 152 VADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAY----RFEVPTAKFQ 198
+ DF+W++ +A+S+ P V + LK++D S FE+ +FQ
Sbjct: 19 LVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQ 69
>gi|118640870 ADP-ribosyltransferase 5 precursor [Homo sapiens]
Length = 291
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 82 LGALLAGMHTLLQQALRLPPTSLKPDTFRD 111
LG+L G+HT QA+ + P L PDTF D
Sbjct: 10 LGSL--GLHTWQAQAVPILPLGLAPDTFDD 37
>gi|30089992 ADP-ribosyltransferase 5 precursor [Homo sapiens]
Length = 291
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 82 LGALLAGMHTLLQQALRLPPTSLKPDTFRD 111
LG+L G+HT QA+ + P L PDTF D
Sbjct: 10 LGSL--GLHTWQAQAVPILPLGLAPDTFDD 37
>gi|8923458 COMM domain containing 8 [Homo sapiens]
Length = 183
Score = 28.5 bits (62), Expect = 4.9
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 31/146 (21%)
Query: 73 VSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASVVFG 132
V NLP+E++ L +++L Q+ + S K + I Q L ++ ++
Sbjct: 66 VGKNLPDEEIFQQLNQLNSLHQETIMKCVKSRKDE----------IKQALSREIVAI--- 112
Query: 133 SQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSDG---SAYR 189
S AQ Q DF W+V +A+S+ +A P + + L + + Y
Sbjct: 113 -------SSAQLQ--------DFDWQVKLALSSDKIAALRMPLLSLHLDVKENGEVKPYS 157
Query: 190 FEVPTAKFQELRYSVALVLKEMADLE 215
E+ + Q L S+ K + L+
Sbjct: 158 IEMSREELQNLIQSLEAANKVVLQLK 183
>gi|238859593 UDP-glucose ceramide glucosyltransferase-like 2 [Homo
sapiens]
Length = 1516
Score = 28.1 bits (61), Expect = 6.3
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 33 VAAMARLLGDLDRSTFRK---LLKFVVSSLQGEDCREAVQRLGVSANLPEEQLGALLAGM 89
+ + R LG LD + + LL+ + S GE + V+ +G++AN + + + A M
Sbjct: 873 IVSNGRFLGPLDEDFYAEDFYLLEKITFSNLGEKIKGIVENMGINANNMSDFIMKVDALM 932
Query: 90 HTLLQQALRLPPTSLK 105
++ ++A R T L+
Sbjct: 933 SSVPKRASRYDVTFLR 948
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,085,616
Number of Sequences: 37866
Number of extensions: 315498
Number of successful extensions: 801
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 22
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.