Search of human proteins with 122939202

Search of human proteins with 122939202

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|122939202 parkin co-regulated gene protein isoform 2 [Homo
sapiens]
         (257 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|122939206 parkin co-regulated gene protein isoform 2 [Homo sa...   525   e-149
gi|122939202 parkin co-regulated gene protein isoform 2 [Homo sa...   525   e-149
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa...   506   e-144
gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens]           64   2e-10
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s...    29   4.6  
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s...    29   4.6  
gi|33188463 mitochondrial ribosomal protein S9 [Homo sapiens]          28   6.0  
gi|19923191 minichromosome maintenance complex component 3 assoc...    28   7.9  
gi|58331179 KIAA1688 protein [Homo sapiens]                            28   7.9  

>gi|122939206 parkin co-regulated gene protein isoform 2 [Homo
           sapiens]
          Length = 257

 Score =  525 bits (1353), Expect = e-149
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 60
           MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
Sbjct: 1   MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 60

Query: 61  AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 120
           AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
Sbjct: 61  AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 120

Query: 121 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 180
           FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
Sbjct: 121 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 180

Query: 181 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA 240
           MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
Sbjct: 181 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA 240

Query: 241 FINIKYVVPTYESCLLN 257
           FINIKYVVPTYESCLLN
Sbjct: 241 FINIKYVVPTYESCLLN 257


>gi|122939202 parkin co-regulated gene protein isoform 2 [Homo
           sapiens]
          Length = 257

 Score =  525 bits (1353), Expect = e-149
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 60
           MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
Sbjct: 1   MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 60

Query: 61  AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 120
           AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
Sbjct: 61  AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 120

Query: 121 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 180
           FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
Sbjct: 121 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 180

Query: 181 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA 240
           MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA
Sbjct: 181 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA 240

Query: 241 FINIKYVVPTYESCLLN 257
           FINIKYVVPTYESCLLN
Sbjct: 241 FINIKYVVPTYESCLLN 257


>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
           sapiens]
          Length = 296

 Score =  506 bits (1303), Expect = e-144
 Identities = 257/296 (86%), Positives = 257/296 (86%), Gaps = 39/296 (13%)

Query: 1   MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 60
           MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG
Sbjct: 1   MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 60

Query: 61  AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 120
           AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT
Sbjct: 61  AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 120

Query: 121 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 180
           FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE
Sbjct: 121 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 180

Query: 181 MVGKALVPYYRQILPVLNIFKNMN------------------------------------ 204
           MVGKALVPYYRQILPVLNIFKNMN                                    
Sbjct: 181 MVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVA 240

Query: 205 ---VNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN 257
              VNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN
Sbjct: 241 EIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN 296


>gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens]
          Length = 221

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 56  PPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDG 115
           P     F E+   P+AF   Y +G  P  L H S  +++ W+   E L +   L    +G
Sbjct: 64  PKTINPFGEQSRVPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEG 123

Query: 116 LCEMTFPYEFFARQGIHDMLEHGG--NKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQ 173
           L E   PY F +++G  ++L   G   K +P+LP+LI  +K AL   + +V    L  L 
Sbjct: 124 LRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALV 183

Query: 174 HLVVSAEMVGKALVPYYRQIL 194
            L V   +VG +L  + + +L
Sbjct: 184 QLSV---VVGPSLNDHLKHLL 201


>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
           sapiens]
          Length = 1858

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 1   MVAEKETLSLNKCPDKMPKRTKLLAQQ 27
           ++ E E  +LNKCP K PK  K L  +
Sbjct: 711 IITETEVPALNKCPTKYPKTKKHLVNE 737


>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
           sapiens]
          Length = 1858

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 1   MVAEKETLSLNKCPDKMPKRTKLLAQQ 27
           ++ E E  +LNKCP K PK  K L  +
Sbjct: 711 IITETEVPALNKCPTKYPKTKKHLVNE 737


>gi|33188463 mitochondrial ribosomal protein S9 [Homo sapiens]
          Length = 396

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 97  KVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDM 134
           ++++  +DY  Y P+  D   ++ FP+ F  R G HD+
Sbjct: 292 RIKVNGIDYQLYFPITQDRE-QLMFPFHFVDRLGKHDV 328


>gi|19923191 minichromosome maintenance complex component 3 associated
            protein [Homo sapiens]
          Length = 1980

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 29   LPVHQPHSLVSEGFTVKAMMKNSVVRGP 56
            LP++ P +LVS   T++ +MK SV   P
Sbjct: 1900 LPLYLPQTLVSLSHTIEPVMKTSVTTSP 1927


>gi|58331179 KIAA1688 protein [Homo sapiens]
          Length = 1114

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 96   WKVEIEKLDYH---HYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIP 152
            WKV     D H     L L++  L E   P+EF+ +      + H  +      P+  + 
Sbjct: 981  WKVPTGLEDPHVPASLLKLWYRELEEPLIPHEFYEQ-----CIAHYDS------PEAAVA 1029

Query: 153  IKNALNLRNRQVICVTLKVLQHLVVSAEM 181
            + +AL   NR V+C  ++ LQ  V  A +
Sbjct: 1030 VVHALPRINRMVLCYLIRFLQVFVQPANV 1058


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,010,943
Number of Sequences: 37866
Number of extensions: 451867
Number of successful extensions: 857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 11
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.