Search of human proteins with 32563567

Search of human proteins with 32563567

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|32563567 DTW domain containing 1 [Homo sapiens]
         (304 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|222352141 DTW domain containing 1 [Homo sapiens]                   628   e-180
gi|32563567 DTW domain containing 1 [Homo sapiens]                    628   e-180
gi|58331163 PHD finger protein 19 isoform b [Homo sapiens]             30   2.0  
gi|58331161 PHD finger protein 19 isoform a [Homo sapiens]             30   2.0  
gi|110611228 utrophin [Homo sapiens]                                   30   2.6  
gi|27734929 cyclic nucleotide binding domain containing 1 [Homo ...    30   3.5  
gi|108773804 Fraser syndrome 1 [Homo sapiens]                          30   3.5  
gi|70608155 phosphodiesterase 3A [Homo sapiens]                        28   7.7  
gi|42475941 zinc finger protein 261 [Homo sapiens]                     28   7.7  
gi|4827067 zinc finger protein 261 [Homo sapiens]                      28   7.7  

>gi|222352141 DTW domain containing 1 [Homo sapiens]
          Length = 304

 Score =  628 bits (1619), Expect = e-180
 Identities = 304/304 (100%), Positives = 304/304 (100%)

Query: 1   MSLNPPIFLKRSEENSSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRSKCLK 60
           MSLNPPIFLKRSEENSSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRSKCLK
Sbjct: 1   MSLNPPIFLKRSEENSSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRSKCLK 60

Query: 61  CGGSRMFYCYTCYVPVENVPIEQIPLVKLPLKIDIIKHPNETDGKSTAIHAKLLAPEFVN 120
           CGGSRMFYCYTCYVPVENVPIEQIPLVKLPLKIDIIKHPNETDGKSTAIHAKLLAPEFVN
Sbjct: 61  CGGSRMFYCYTCYVPVENVPIEQIPLVKLPLKIDIIKHPNETDGKSTAIHAKLLAPEFVN 120

Query: 121 IYTYPCIPEYEEKDHEVALIFPGPQSISIKDISFHLQKRIQNNVRGKNDDPDKPSFKRKR 180
           IYTYPCIPEYEEKDHEVALIFPGPQSISIKDISFHLQKRIQNNVRGKNDDPDKPSFKRKR
Sbjct: 121 IYTYPCIPEYEEKDHEVALIFPGPQSISIKDISFHLQKRIQNNVRGKNDDPDKPSFKRKR 180

Query: 181 TEEQEFCDLNDSKCKGTTLKKIIFIDSTWNQTNKIFTDERLQGLLQVELKTRKTCFWRHQ 240
           TEEQEFCDLNDSKCKGTTLKKIIFIDSTWNQTNKIFTDERLQGLLQVELKTRKTCFWRHQ
Sbjct: 181 TEEQEFCDLNDSKCKGTTLKKIIFIDSTWNQTNKIFTDERLQGLLQVELKTRKTCFWRHQ 240

Query: 241 KGKPDTFLSTIEAIYYFLVDYHTDILKEKYRGQYDNLLFFYSFMYQLIKNAKCSGDKETG 300
           KGKPDTFLSTIEAIYYFLVDYHTDILKEKYRGQYDNLLFFYSFMYQLIKNAKCSGDKETG
Sbjct: 241 KGKPDTFLSTIEAIYYFLVDYHTDILKEKYRGQYDNLLFFYSFMYQLIKNAKCSGDKETG 300

Query: 301 KLTH 304
           KLTH
Sbjct: 301 KLTH 304


>gi|32563567 DTW domain containing 1 [Homo sapiens]
          Length = 304

 Score =  628 bits (1619), Expect = e-180
 Identities = 304/304 (100%), Positives = 304/304 (100%)

Query: 1   MSLNPPIFLKRSEENSSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRSKCLK 60
           MSLNPPIFLKRSEENSSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRSKCLK
Sbjct: 1   MSLNPPIFLKRSEENSSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRSKCLK 60

Query: 61  CGGSRMFYCYTCYVPVENVPIEQIPLVKLPLKIDIIKHPNETDGKSTAIHAKLLAPEFVN 120
           CGGSRMFYCYTCYVPVENVPIEQIPLVKLPLKIDIIKHPNETDGKSTAIHAKLLAPEFVN
Sbjct: 61  CGGSRMFYCYTCYVPVENVPIEQIPLVKLPLKIDIIKHPNETDGKSTAIHAKLLAPEFVN 120

Query: 121 IYTYPCIPEYEEKDHEVALIFPGPQSISIKDISFHLQKRIQNNVRGKNDDPDKPSFKRKR 180
           IYTYPCIPEYEEKDHEVALIFPGPQSISIKDISFHLQKRIQNNVRGKNDDPDKPSFKRKR
Sbjct: 121 IYTYPCIPEYEEKDHEVALIFPGPQSISIKDISFHLQKRIQNNVRGKNDDPDKPSFKRKR 180

Query: 181 TEEQEFCDLNDSKCKGTTLKKIIFIDSTWNQTNKIFTDERLQGLLQVELKTRKTCFWRHQ 240
           TEEQEFCDLNDSKCKGTTLKKIIFIDSTWNQTNKIFTDERLQGLLQVELKTRKTCFWRHQ
Sbjct: 181 TEEQEFCDLNDSKCKGTTLKKIIFIDSTWNQTNKIFTDERLQGLLQVELKTRKTCFWRHQ 240

Query: 241 KGKPDTFLSTIEAIYYFLVDYHTDILKEKYRGQYDNLLFFYSFMYQLIKNAKCSGDKETG 300
           KGKPDTFLSTIEAIYYFLVDYHTDILKEKYRGQYDNLLFFYSFMYQLIKNAKCSGDKETG
Sbjct: 241 KGKPDTFLSTIEAIYYFLVDYHTDILKEKYRGQYDNLLFFYSFMYQLIKNAKCSGDKETG 300

Query: 301 KLTH 304
           KLTH
Sbjct: 301 KLTH 304


>gi|58331163 PHD finger protein 19 isoform b [Homo sapiens]
          Length = 207

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 13  EENSSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRSKCLKCGGSRMFYCYTC 72
           E+NS  +V  K  Q   +  E+P  N+CL              ++ L CG   + Y   C
Sbjct: 75  EDNSKYWVLWKDIQHAGVPGEEPKCNICLGK-------TSGPLNEILICGKCGLGYHQQC 127

Query: 73  YVPV 76
           ++P+
Sbjct: 128 HIPI 131


>gi|58331161 PHD finger protein 19 isoform a [Homo sapiens]
          Length = 580

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 13  EENSSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRSKCLKCGGSRMFYCYTC 72
           E+NS  +V  K  Q   +  E+P  N+CL              ++ L CG   + Y   C
Sbjct: 75  EDNSKYWVLWKDIQHAGVPGEEPKCNICLGK-------TSGPLNEILICGKCGLGYHQQC 127

Query: 73  YVPV 76
           ++P+
Sbjct: 128 HIPI 131


>gi|110611228 utrophin [Homo sapiens]
          Length = 3433

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 37/215 (17%)

Query: 9    LKRSEENSSKFVETKQSQTTSIASEDP----LQNLCLASQEVLQKAQQSGRSKCLKCGGS 64
            L+   EN  KFVE     +      D     ++ +    +E+L +  +  + + ++    
Sbjct: 1778 LENDIENMLKFVEKHLESSDEDEKMDEESAQIEEVLQRGEEMLHQPMEDNKKEKIRL--- 1834

Query: 65   RMFYCYTCYVPVENVPIEQ--------------------IPLVKLPLKIDIIKHPNETDG 104
            ++   +T Y  ++ +PI+Q                    + + K+ L +D ++       
Sbjct: 1835 QLLLLHTRYNKIKAIPIQQRKMGQLASGIRSSLLPTDYLVEINKILLCMDDVELSLNVPE 1894

Query: 105  KSTAIHAKLLAPE--FVNIYTY-----PCIPEYEEKDHEVALIFPGPQSISIKDISFHLQ 157
             +TAI+      E    NI          I    EK  +V L   GP++I I+D    L 
Sbjct: 1895 LNTAIYEDFSFQEDSLKNIKDQLDKLGEQIAVIHEKQPDVILEASGPEAIQIRDTLTQLN 1954

Query: 158  KRIQNNVRGKNDDPDKPSFKRKRTEEQEF-CDLND 191
             +     R  +D   K  F R   E ++F CDLND
Sbjct: 1955 AKWDRINRMYSD--RKGCFDRAMEEWRQFHCDLND 1987


>gi|27734929 cyclic nucleotide binding domain containing 1 [Homo
           sapiens]
          Length = 436

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 189 LNDSKCKGTTLKKIIFIDSTWNQTNKIFTDER----LQGLLQVELKTRKTCFWRHQKGKP 244
           LND   K  TL K +F + TW + + +  ++     L+GL + +    K          P
Sbjct: 170 LNDKHLK--TLSKTVFSE-TWLKGSTVVANDGFYVILKGLARPQTNVYKNLI--EGSDSP 224

Query: 245 DTFLSTIEAIYYFLVDYHTDILKEKYRGQYDNLLFFYS 282
           D+F+S     + +  ++    L E Y   YD++L  +S
Sbjct: 225 DSFISQSFHSFIWSEEFKNSTLAEMYLPSYDSMLSKWS 262


>gi|108773804 Fraser syndrome 1 [Homo sapiens]
          Length = 4011

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 56  SKCLKCGGSRMFYCYTCYVPVENVPIEQIPLVKLP 90
           S CL C G    +C  C  P E + +EQ+  V +P
Sbjct: 657 SSCLACMGPAPSHCTGCKKPEEGLQVEQLSDVGIP 691


>gi|70608155 phosphodiesterase 3A [Homo sapiens]
          Length = 1141

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 166  GKNDDPDKPSFKRKRTEEQEFCDLNDSKCKGTTLKKIIFIDSTWN--QTNKIF-----TD 218
            G  DDP++   +     E+E C+ N+S  K T  ++ I+   T +  Q +K++      +
Sbjct: 1034 GDTDDPEEEEEEAPAPNEEETCENNESPKKKTFKRRKIYCQITQHLLQNHKMWKKVIEEE 1093

Query: 219  ERLQGL 224
            +RL G+
Sbjct: 1094 QRLAGI 1099


>gi|42475941 zinc finger protein 261 [Homo sapiens]
          Length = 1370

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 6   PIFLKRSEENSSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRSKCLKC 61
           P+FL  + E++ K VET +     I S +PL+   LA  E++ +A++  ++    C
Sbjct: 899 PMFLPTTLESTDKIVETIEELKVKIPS-NPLEADILAMAEMIAEAEELDKASSDLC 953


>gi|4827067 zinc finger protein 261 [Homo sapiens]
          Length = 1370

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 6   PIFLKRSEENSSKFVETKQSQTTSIASEDPLQNLCLASQEVLQKAQQSGRSKCLKC 61
           P+FL  + E++ K VET +     I S +PL+   LA  E++ +A++  ++    C
Sbjct: 899 PMFLPTTLESTDKIVETIEELKVKIPS-NPLEADILAMAEMIAEAEELDKASSDLC 953


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,161,261
Number of Sequences: 37866
Number of extensions: 553224
Number of successful extensions: 1236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 11
length of query: 304
length of database: 18,247,518
effective HSP length: 102
effective length of query: 202
effective length of database: 14,385,186
effective search space: 2905807572
effective search space used: 2905807572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.