Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 31542733
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31542733 PQ loop repeat containing 1 isoform 1 [Homo
sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31542733 PQ loop repeat containing 1 isoform 1 [Homo sapiens] 549 e-156
gi|226505140 PQ loop repeat containing 1 isoform 3 [Homo sapiens] 504 e-143
gi|226503974 PQ loop repeat containing 1 isoform 2 [Homo sapiens] 229 2e-60
gi|119943110 cystinosis, nephropathic isoform 2 [Homo sapiens] 34 0.15
gi|119943118 cystinosis, nephropathic isoform 1 [Homo sapiens] 34 0.15
gi|7662022 lipin 2 [Homo sapiens] 30 2.2
gi|15208665 tripartite motif protein TRIM14 isoform alpha [Homo ... 28 8.5
gi|15208663 tripartite motif protein TRIM14 isoform alpha [Homo ... 28 8.5
gi|15208667 tripartite motif protein TRIM14 isoform alpha [Homo ... 28 8.5
>gi|31542733 PQ loop repeat containing 1 isoform 1 [Homo sapiens]
Length = 271
Score = 549 bits (1414), Expect = e-156
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA
Sbjct: 1 MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
Query: 61 NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTAADSKDEE 120
NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTAADSKDEE
Sbjct: 61 NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTAADSKDEE 120
Query: 121 VKVAPRRSFLDFDPHHFWQWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVL 180
VKVAPRRSFLDFDPHHFWQWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVL
Sbjct: 121 VKVAPRRSFLDFDPHHFWQWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVL 180
Query: 181 TEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLV 240
TEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLV
Sbjct: 181 TEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLV 240
Query: 241 DLAILGQAYAFARHPQKPAPHAVHPTGTKAL 271
DLAILGQAYAFARHPQKPAPHAVHPTGTKAL
Sbjct: 241 DLAILGQAYAFARHPQKPAPHAVHPTGTKAL 271
>gi|226505140 PQ loop repeat containing 1 isoform 3 [Homo sapiens]
Length = 253
Score = 504 bits (1298), Expect = e-143
Identities = 253/271 (93%), Positives = 253/271 (93%), Gaps = 18/271 (6%)
Query: 1 MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA
Sbjct: 1 MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
Query: 61 NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTAADSKDEE 120
NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFT
Sbjct: 61 NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFT-------- 112
Query: 121 VKVAPRRSFLDFDPHHFWQWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVL 180
DFDPHHFWQWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVL
Sbjct: 113 ----------DFDPHHFWQWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVL 162
Query: 181 TEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLV 240
TEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLV
Sbjct: 163 TEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLV 222
Query: 241 DLAILGQAYAFARHPQKPAPHAVHPTGTKAL 271
DLAILGQAYAFARHPQKPAPHAVHPTGTKAL
Sbjct: 223 DLAILGQAYAFARHPQKPAPHAVHPTGTKAL 253
>gi|226503974 PQ loop repeat containing 1 isoform 2 [Homo sapiens]
Length = 132
Score = 229 bits (584), Expect = 2e-60
Identities = 113/114 (99%), Positives = 114/114 (100%)
Query: 1 MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA
Sbjct: 1 MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
Query: 61 NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTAA 114
NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTA+
Sbjct: 61 NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTAS 114
>gi|119943110 cystinosis, nephropathic isoform 2 [Homo sapiens]
Length = 367
Score = 33.9 bits (76), Expect = 0.15
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 146 YVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQLYRNHRHQSTEGMSIK 205
+V ++A GV ++ +L S ++ + + PQ Y N ++STEG SI
Sbjct: 249 FVTMIVAAVGVTTWLQFLFCFS--------YIKLAVTLVKYFPQAYMNFYYKSTEGWSIG 300
Query: 206 MVLMWTSGDAFKTAYFLLK-----------GAPLQFSVCGLLQVLVDLAILGQAYAFAR 253
VL+ +G +F L+ G P +F + G+ ++ D+ Q + R
Sbjct: 301 NVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGL-GVFSIVFDVVFFIQHFCLYR 358
>gi|119943118 cystinosis, nephropathic isoform 1 [Homo sapiens]
Length = 400
Score = 33.9 bits (76), Expect = 0.15
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 146 YVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQLYRNHRHQSTEGMSIK 205
+V ++A GV ++ +L S ++ + + PQ Y N ++STEG SI
Sbjct: 249 FVTMIVAAVGVTTWLQFLFCFS--------YIKLAVTLVKYFPQAYMNFYYKSTEGWSIG 300
Query: 206 MVLMWTSGDAFKTAYFLLK-----------GAPLQFSVCGLLQVLVDLAILGQAYAFAR 253
VL+ +G +F L+ G P +F + G+ ++ D+ Q + R
Sbjct: 301 NVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGL-GVFSIVFDVVFFIQHFCLYR 358
>gi|7662022 lipin 2 [Homo sapiens]
Length = 896
Score = 30.0 bits (66), Expect = 2.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 112 TAADSKDEEVKVAPRRSFLDFDPHHFWQWSSFSD 145
TA D E++V P S L + H W W F +
Sbjct: 238 TACPKSDSELEVKPAESLLRSESHMEWTWGGFPE 271
>gi|15208665 tripartite motif protein TRIM14 isoform alpha [Homo
sapiens]
Length = 442
Score = 28.1 bits (61), Expect = 8.5
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 143 FSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQL 190
F DY VLAF V G +++L A F E L L E + +P+L
Sbjct: 394 FLDYEAGVLAFYDVTGGMSHLHTFRATFQEPLYPALRLWEGAISIPRL 441
>gi|15208663 tripartite motif protein TRIM14 isoform alpha [Homo
sapiens]
Length = 442
Score = 28.1 bits (61), Expect = 8.5
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 143 FSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQL 190
F DY VLAF V G +++L A F E L L E + +P+L
Sbjct: 394 FLDYEAGVLAFYDVTGGMSHLHTFRATFQEPLYPALRLWEGAISIPRL 441
>gi|15208667 tripartite motif protein TRIM14 isoform alpha [Homo
sapiens]
Length = 442
Score = 28.1 bits (61), Expect = 8.5
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 143 FSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQL 190
F DY VLAF V G +++L A F E L L E + +P+L
Sbjct: 394 FLDYEAGVLAFYDVTGGMSHLHTFRATFQEPLYPALRLWEGAISIPRL 441
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.138 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,632,207
Number of Sequences: 37866
Number of extensions: 376088
Number of successful extensions: 904
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 11
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.