Search of human proteins with 12232379

Search of human proteins with 12232379

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|12232379 elongation of very long chain fatty acids-like 4
[Homo sapiens]
         (314 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|12232379 elongation of very long chain fatty acids-like 4 [Ho...   665   0.0  
gi|157388945 elongation of very long chain fatty acids-like 2 [H...   268   6e-72
gi|11464975 elongation of very long chain fatty acids-like 5 [Ho...   249   3e-66
gi|157388949 elongation of very long chain fatty acids-like 7 [H...   240   1e-63
gi|157388947 elongation of very long chain fatty acids-like 7 [H...   240   1e-63
gi|13489093 elongation of very long chain fatty acids-like 1 [Ho...   215   5e-56
gi|23097310 elongation of very long chain fatty acids like 3 [Ho...    84   2e-16
gi|195539343 elongation of very long chain fatty acids-like 6 [H...    80   3e-15
gi|13129088 elongation of very long chain fatty acids-like 6 [Ho...    80   3e-15
gi|20143480 phosphatidate cytidylyltransferase 2 [Homo sapiens]        36   0.039
gi|13994300 transmembrane protein 120A [Homo sapiens]                  33   0.33 
gi|13129060 transmembrane protein 38A [Homo sapiens]                   29   6.2  

>gi|12232379 elongation of very long chain fatty acids-like 4 [Homo
           sapiens]
          Length = 314

 Score =  665 bits (1716), Expect = 0.0
 Identities = 314/314 (100%), Positives = 314/314 (100%)

Query: 1   MGLLDSEPGSVLNVVSTALNDTVEFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFV 60
           MGLLDSEPGSVLNVVSTALNDTVEFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFV
Sbjct: 1   MGLLDSEPGSVLNVVSTALNDTVEFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFV 60

Query: 61  WLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVH 120
           WLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVH
Sbjct: 61  WLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVH 120

Query: 121 EVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQ 180
           EVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQ
Sbjct: 121 EVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQ 180

Query: 181 AFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYTD 240
           AFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYTD
Sbjct: 181 AFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYTD 240

Query: 241 CPFPKWMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAGKTAMNGISANGVSKSEKQLMI 300
           CPFPKWMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAGKTAMNGISANGVSKSEKQLMI
Sbjct: 241 CPFPKWMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAGKTAMNGISANGVSKSEKQLMI 300

Query: 301 ENGKKQKNGKAKGD 314
           ENGKKQKNGKAKGD
Sbjct: 301 ENGKKQKNGKAKGD 314


>gi|157388945 elongation of very long chain fatty acids-like 2 [Homo
           sapiens]
          Length = 296

 Score =  268 bits (684), Expect = 6e-72
 Identities = 124/276 (44%), Positives = 179/276 (64%), Gaps = 14/276 (5%)

Query: 34  DKRVENWPLMQSPWPTLSISTLYLLFVWLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFI 93
           D RV  W ++ S  PT  ++ +YLL +WLG K+MK+R    +R +L +YN G+ LL+ ++
Sbjct: 23  DSRVRGWFMLDSYLPTFFLTVMYLLSIWLGNKYMKNRPALSLRGILTLYNLGITLLSAYM 82

Query: 94  FRELFMGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQ 153
             EL + ++  GY+  CQ +  +    ++R+A  LWWY+ SK VE+LDT+FF+LRKK +Q
Sbjct: 83  LAELILSTWEGGYNLQCQDLTSAGEA-DIRVAKVLWWYYFSKSVEFLDTIFFVLRKKTSQ 141

Query: 154 VSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLW 213
           ++FLHVYHH +MF +WW  + W+  GQ+FFG  LNSFIH++MYSYYGL+ F P + KYLW
Sbjct: 142 ITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSVF-PSMHKYLW 200

Query: 214 WKRYLTMLQLIQFHVTIGHTALSLYTDCPFPKWMHWALIAYAISFIFLFLNFYIRTY--- 270
           WK+YLT  QL+QF +TI HT  ++   C FP        +Y ++ + LFLNFY++TY   
Sbjct: 201 WKKYLTQAQLVQFVLTITHTMSAVVKPCGFPFGCLIFQSSYMLTLVILFLNFYVQTYRKK 260

Query: 271 ---KEPKKPKAGKTAMNGIS------ANGVSKSEKQ 297
              K+ ++P AGK   NG S      ANGV   + Q
Sbjct: 261 PMKKDMQEPPAGKEVKNGFSKAYFTAANGVMNKKAQ 296


>gi|11464975 elongation of very long chain fatty acids-like 5 [Homo
           sapiens]
          Length = 299

 Score =  249 bits (635), Expect = 3e-66
 Identities = 113/239 (47%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 34  DKRVENWPLMQSPWPTLSISTLYLLFVWLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFI 93
           D RV+ W L+ +  PT   S +YLL VWLGPK+M++++PF  R +L++YN G+ LL+L++
Sbjct: 20  DTRVKGWFLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYNLGLTLLSLYM 79

Query: 94  FRELFMGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQ 153
           F EL  G +   Y++ CQ    +    +++I   LWWY+ SK +E++DT FFILRK N+Q
Sbjct: 80  FCELVTGVWEGKYNFFCQGTRTAGE-SDMKIIRVLWWYYFSKLIEFMDTFFFILRKNNHQ 138

Query: 154 VSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLW 213
           ++ LHVYHH +M  +WW  + WV  G ++FGA LNSFIHV+MYSYYGL++  P ++ YLW
Sbjct: 139 ITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSV-PSMRPYLW 197

Query: 214 WKRYLTMLQLIQFHVTIGHTALSLYTDCPFPKWMHWALIAYAISFIFLFLNFYIRTYKE 272
           WK+Y+T  QL+QF +TI  T+  +   C FP    +  I Y IS I LF NFYI+TY +
Sbjct: 198 WKKYITQGQLLQFVLTIIQTSCGVIWPCTFPLGWLYFQIGYMISLIALFTNFYIQTYNK 256


>gi|157388949 elongation of very long chain fatty acids-like 7 [Homo
           sapiens]
          Length = 281

 Score =  240 bits (613), Expect = 1e-63
 Identities = 124/272 (45%), Positives = 171/272 (62%), Gaps = 7/272 (2%)

Query: 22  TVEFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFVW-LGPKWMKDREPFQMRLVLI 80
           TV  Y      AD RVE+W LM SP P   +   Y+ FV  LGPK M++R+PF+++  +I
Sbjct: 10  TVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMI 69

Query: 81  IYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYL 140
            YNF +VL ++++  E  M  +  GYS+ C  VDYS +   +R+A   W Y+ SK +E L
Sbjct: 70  TYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELL 129

Query: 141 DTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYG 200
           DT+FF+LRKKN+QV+FLHV+HH  M   WW G+K+ AGG   F A LN+ +HV+MYSYYG
Sbjct: 130 DTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYG 189

Query: 201 LTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLY-TDC--PFPKWMHWALIAYAIS 257
           L+A GP  QKYLWWK+YLT LQL+QF +   H +   +  DC   FP +    +++Y+  
Sbjct: 190 LSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFA-CIIMSYSFM 248

Query: 258 FIFLFLNFYIRTYKEPKKPKAGKTAMNGISAN 289
           F+ LFL+F+ R Y   K  +  KT  NG   N
Sbjct: 249 FLLLFLHFWYRAY--TKGQRLPKTVKNGTCKN 278


>gi|157388947 elongation of very long chain fatty acids-like 7 [Homo
           sapiens]
          Length = 281

 Score =  240 bits (613), Expect = 1e-63
 Identities = 124/272 (45%), Positives = 171/272 (62%), Gaps = 7/272 (2%)

Query: 22  TVEFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFVW-LGPKWMKDREPFQMRLVLI 80
           TV  Y      AD RVE+W LM SP P   +   Y+ FV  LGPK M++R+PF+++  +I
Sbjct: 10  TVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMI 69

Query: 81  IYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYL 140
            YNF +VL ++++  E  M  +  GYS+ C  VDYS +   +R+A   W Y+ SK +E L
Sbjct: 70  TYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELL 129

Query: 141 DTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYG 200
           DT+FF+LRKKN+QV+FLHV+HH  M   WW G+K+ AGG   F A LN+ +HV+MYSYYG
Sbjct: 130 DTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYG 189

Query: 201 LTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLY-TDC--PFPKWMHWALIAYAIS 257
           L+A GP  QKYLWWK+YLT LQL+QF +   H +   +  DC   FP +    +++Y+  
Sbjct: 190 LSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFA-CIIMSYSFM 248

Query: 258 FIFLFLNFYIRTYKEPKKPKAGKTAMNGISAN 289
           F+ LFL+F+ R Y   K  +  KT  NG   N
Sbjct: 249 FLLLFLHFWYRAY--TKGQRLPKTVKNGTCKN 278


>gi|13489093 elongation of very long chain fatty acids-like 1 [Homo
           sapiens]
          Length = 279

 Score =  215 bits (547), Expect = 5e-56
 Identities = 117/276 (42%), Positives = 167/276 (60%), Gaps = 10/276 (3%)

Query: 23  VEFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFVW-LGPKWMKDREPFQMRLVLII 81
           V  Y+     AD R++ +PLM SP    SI   Y+ FV  LGP+ M +R+PFQ+R  +I+
Sbjct: 5   VNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRGFMIV 64

Query: 82  YNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLD 141
           YNF +V L+L+I  E  M  + + Y++ C  VDYSN+   +R+    W +  SK +E +D
Sbjct: 65  YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFIELMD 124

Query: 142 TVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYGL 201
           TV FILRKK+ QV+FLHV+HH  +   WW G+K   GG   F A +NS +HVIMY YYGL
Sbjct: 125 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYLYYGL 184

Query: 202 TAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLY-TDC--PFPKWMHWALIAYAISF 258
           +AFGP  Q YLWWK+++T +QLIQF +   H +   + + C   +P  +H  +  Y   F
Sbjct: 185 SAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIH-LIWMYGTIF 243

Query: 259 IFLFLNFYIRTYKEPKK-PKAGKTAMNGISANGVSK 293
             LF NF+  +Y + K+ P+A     NG  A G++K
Sbjct: 244 FMLFSNFWYHSYTKGKRLPRA--LQQNG--APGIAK 275


>gi|23097310 elongation of very long chain fatty acids like 3 [Homo
           sapiens]
          Length = 270

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 69/242 (28%), Positives = 117/242 (48%), Gaps = 15/242 (6%)

Query: 41  PLMQSPWPT-LSISTLYLLFVWLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELF- 98
           P  +  W T   I+ +YL+ + +G  +MK+R+ F ++  LI+++F + + ++     ++ 
Sbjct: 28  PFFEEYWATSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSFCLAIFSILGAVRMWG 87

Query: 99  -MGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFL 157
            MG+       + Q+V + N +    +    W + +SK +E  DT F ILRK+   + F+
Sbjct: 88  IMGTVLL-TGGLKQTVCFINFIDNSTVKFWSWVFLLSKVIELGDTAFIILRKR--PLIFI 144

Query: 158 HVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRY 217
           H YHH T+      G K       +F   +N  +H IMY+YY L A      K L     
Sbjct: 145 HWYHHSTVLVYTSFGYKNKVPAGGWF-VTMNFGVHAIMYTYYTLKAANVKPPKML--PML 201

Query: 218 LTMLQLIQFHVTIGHTALSLY----TDC-PFPKWMHWALIAYAISFIFLFLNFYIRTYKE 272
           +T LQ++Q  V    + L+        C    + + W+ I Y   FI LF +F+ +TY  
Sbjct: 202 ITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMTYFI-LFAHFFCQTYIR 260

Query: 273 PK 274
           PK
Sbjct: 261 PK 262


>gi|195539343 elongation of very long chain fatty acids-like 6 [Homo
           sapiens]
          Length = 265

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 70/268 (26%), Positives = 119/268 (44%), Gaps = 39/268 (14%)

Query: 22  TVEFYRWTWSIADKRVENWPLMQSPWP-TLSISTLYLLFVWLGPKWMKDREPFQMRLVLI 80
           T++ Y +     +     W  MQ  W  +   S LY  F++ G   M  R  F++R  L+
Sbjct: 7   TLQEYEFEKQFNENEAIQW--MQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELRKPLV 64

Query: 81  IYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVRI----AAALWWY--FVS 134
           +++  + + +  IF  L  G+Y     YI  +     +V +        +  W Y   +S
Sbjct: 65  LWSLTLAVFS--IFGALRTGAYMV---YILMTKGLKQSVCDQGFYNGPVSKFWAYAFVLS 119

Query: 135 KGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVI 194
           K  E  DT+F ILRK+  ++ FLH YHH T+    W   K +  G  +F   +N  +H +
Sbjct: 120 KAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHAV 176

Query: 195 MYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYTDCPFPKWMH------ 248
           MYSYY L A G  + +   +  ++T+ Q+ Q    +    ++    C    WM       
Sbjct: 177 MYSYYALRAAGFRVSRK--FAMFITLSQITQM---LMGCVVNYLVFC----WMQHDQCHS 227

Query: 249 ------WALIAYAISFIFLFLNFYIRTY 270
                 W+ + Y +S++ LF +F+   Y
Sbjct: 228 HFQNIFWSSLMY-LSYLVLFCHFFFEAY 254


>gi|13129088 elongation of very long chain fatty acids-like 6 [Homo
           sapiens]
          Length = 265

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 70/268 (26%), Positives = 119/268 (44%), Gaps = 39/268 (14%)

Query: 22  TVEFYRWTWSIADKRVENWPLMQSPWP-TLSISTLYLLFVWLGPKWMKDREPFQMRLVLI 80
           T++ Y +     +     W  MQ  W  +   S LY  F++ G   M  R  F++R  L+
Sbjct: 7   TLQEYEFEKQFNENEAIQW--MQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELRKPLV 64

Query: 81  IYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVRI----AAALWWY--FVS 134
           +++  + + +  IF  L  G+Y     YI  +     +V +        +  W Y   +S
Sbjct: 65  LWSLTLAVFS--IFGALRTGAYMV---YILMTKGLKQSVCDQGFYNGPVSKFWAYAFVLS 119

Query: 135 KGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVI 194
           K  E  DT+F ILRK+  ++ FLH YHH T+    W   K +  G  +F   +N  +H +
Sbjct: 120 KAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHAV 176

Query: 195 MYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYTDCPFPKWMH------ 248
           MYSYY L A G  + +   +  ++T+ Q+ Q    +    ++    C    WM       
Sbjct: 177 MYSYYALRAAGFRVSRK--FAMFITLSQITQM---LMGCVVNYLVFC----WMQHDQCHS 227

Query: 249 ------WALIAYAISFIFLFLNFYIRTY 270
                 W+ + Y +S++ LF +F+   Y
Sbjct: 228 HFQNIFWSSLMY-LSYLVLFCHFFFEAY 254


>gi|20143480 phosphatidate cytidylyltransferase 2 [Homo sapiens]
          Length = 445

 Score = 36.2 bits (82), Expect = 0.039
 Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 42/177 (23%)

Query: 5   DSEPGSVLNVVSTALNDTVEFYRWTWSIADKRVENWPLMQSPWP----TLSISTLYLLFV 60
           DSE  +    +  + +DT E      S    R +NW      W     TL++   + + +
Sbjct: 34  DSESRAESAPLPVSADDTPEVLNRALSNLSSRWKNW------WVRGILTLAMIAFFFIII 87

Query: 61  WLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVH 120
           +LGP          M L++I+     + + +  F E+    YN  +SY            
Sbjct: 88  YLGP----------MVLMIIV-----MCVQIKCFHEIITIGYNVYHSY------------ 120

Query: 121 EVRIAAALWWYFVS--KGVEYLDTV---FFILRKKNNQVSFLHVYHHCTMFTLWWIG 172
           ++     L WYF+       Y +TV   FF L ++   +  L  YH    FTL+ IG
Sbjct: 121 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIG 177


>gi|13994300 transmembrane protein 120A [Homo sapiens]
          Length = 343

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 37/191 (19%)

Query: 107 SYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMF 166
           S+ C+ +  ++ V +      L WY+ +  +        IL    +++    V+HH    
Sbjct: 148 SFTCRFL-LNSRVTDAAFNFLLVWYYCTLTIRES-----ILINNGSRIKGWWVFHHYVST 201

Query: 167 TLWWIGIKWVAG-------GQAFFGAQLNSFIHVIMYSY-----YGLTAFGP-------- 206
            L  + + W  G        Q    +   SF+  + Y Y     Y L A G         
Sbjct: 202 FLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGERHTMDLTV 261

Query: 207 -WIQKYLWWKRYLTMLQLIQFHVTIGH-----TALSLYTDCPFPKWMHWALIAYAISFIF 260
              Q ++W  R LT L    F    GH      AL+L+     P+   W ++     F+ 
Sbjct: 262 EGFQSWMW--RGLTFLLPFLF---FGHFWQLFNALTLFNLAQDPQCKEWQVLMCGFPFLL 316

Query: 261 LFLNFYIRTYK 271
           LFL  +  T +
Sbjct: 317 LFLGNFFTTLR 327


>gi|13129060 transmembrane protein 38A [Homo sapiens]
          Length = 299

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 28/140 (20%)

Query: 52  ISTLYLLFVWLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQ 111
           +S LYL +   G   +  R P    L  +++ FG      +I  +L +G           
Sbjct: 32  VSILYLKYE-PGAVELSRRHPIASWLCAMLHCFGS-----YILADLLLGE---------P 76

Query: 112 SVDYSNNVHEVRIAAALWW--YFVSKGVEYLDTVFF-----------ILRKKNNQVSFLH 158
            +DY +N   + +A+A+W+  +F    + Y    F            ++R +   V   H
Sbjct: 77  LIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVAMKEVVRVRKIAVGIHH 136

Query: 159 VYHHCTMFTLWWIGIKWVAG 178
            +HH        I   WV G
Sbjct: 137 AHHHYHHGWFVMIATGWVKG 156


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.139    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,576,511
Number of Sequences: 37866
Number of extensions: 473831
Number of successful extensions: 1325
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 12
length of query: 314
length of database: 18,247,518
effective HSP length: 102
effective length of query: 212
effective length of database: 14,385,186
effective search space: 3049659432
effective search space used: 3049659432
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.