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Search of human proteins with 28373076
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28373076 sialyltransferase 6 isoform e [Homo sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28373076 sialyltransferase 6 isoform e [Homo sapiens] 315 1e-86
gi|28373072 sialyltransferase 6 isoform c [Homo sapiens] 303 5e-83
gi|28373084 sialyltransferase 6 isoform h [Homo sapiens] 273 3e-74
gi|28373074 sialyltransferase 6 isoform d [Homo sapiens] 270 5e-73
gi|5454060 sialyltransferase 6 isoform j [Homo sapiens] 270 5e-73
gi|28373070 sialyltransferase 6 isoform b [Homo sapiens] 258 2e-69
gi|28373078 sialyltransferase 6 isoform f [Homo sapiens] 239 9e-64
gi|28373082 sialyltransferase 6 isoform g [Homo sapiens] 228 1e-60
gi|28373068 sialyltransferase 6 isoform a [Homo sapiens] 227 4e-60
gi|28373086 sialyltransferase 6 isoform i [Homo sapiens] 192 1e-49
gi|161019170 mucin 5AC [Homo sapiens] 30 0.83
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 30 0.83
gi|17998700 phosphatidylinositol glycan anchor biosynthesis, cla... 29 1.9
gi|27262638 sperm associated antigen 1 [Homo sapiens] 28 4.1
gi|27262636 sperm associated antigen 1 [Homo sapiens] 28 4.1
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 27 5.4
gi|4507043 solute carrier family 6 member 4 [Homo sapiens] 27 7.0
>gi|28373076 sialyltransferase 6 isoform e [Homo sapiens]
Length = 155
Score = 315 bits (806), Expect = 1e-86
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
Query: 61 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 120
GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI
Sbjct: 61 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 120
Query: 121 REFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 155
REFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH
Sbjct: 121 REFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 155
>gi|28373072 sialyltransferase 6 isoform c [Homo sapiens]
Length = 170
Score = 303 bits (775), Expect = 5e-83
Identities = 154/170 (90%), Positives = 155/170 (91%), Gaps = 15/170 (8%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSN---------------SVVLS 45
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS+ SVVLS
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
Query: 46 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 105
FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP
Sbjct: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
Query: 106 APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 155
APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH
Sbjct: 121 APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 170
>gi|28373084 sialyltransferase 6 isoform h [Homo sapiens]
Length = 139
Score = 273 bits (699), Expect = 3e-74
Identities = 138/155 (89%), Positives = 139/155 (89%), Gaps = 16/155 (10%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS +YDRL
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS----------------KYDRL 44
Query: 61 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 120
GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI
Sbjct: 45 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 104
Query: 121 REFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 155
REFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH
Sbjct: 105 REFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 139
>gi|28373074 sialyltransferase 6 isoform d [Homo sapiens]
Length = 277
Score = 270 bits (689), Expect = 5e-73
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
Query: 61 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 120
GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI
Sbjct: 61 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 120
Query: 121 REFVPPFGIKGQ 132
REFVPPFGIKGQ
Sbjct: 121 REFVPPFGIKGQ 132
>gi|5454060 sialyltransferase 6 isoform j [Homo sapiens]
Length = 375
Score = 270 bits (689), Expect = 5e-73
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
Query: 61 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 120
GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI
Sbjct: 61 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 120
Query: 121 REFVPPFGIKGQ 132
REFVPPFGIKGQ
Sbjct: 121 REFVPPFGIKGQ 132
>gi|28373070 sialyltransferase 6 isoform b [Homo sapiens]
Length = 390
Score = 258 bits (658), Expect = 2e-69
Identities = 131/147 (89%), Positives = 132/147 (89%), Gaps = 15/147 (10%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSN---------------SVVLS 45
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS+ SVVLS
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
Query: 46 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 105
FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP
Sbjct: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
Query: 106 APMFLDDSFRKWARIREFVPPFGIKGQ 132
APMFLDDSFRKWARIREFVPPFGIKGQ
Sbjct: 121 APMFLDDSFRKWARIREFVPPFGIKGQ 147
>gi|28373078 sialyltransferase 6 isoform f [Homo sapiens]
Length = 429
Score = 239 bits (609), Expect = 9e-64
Identities = 131/186 (70%), Positives = 131/186 (70%), Gaps = 54/186 (29%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
Query: 61 GFLLNLDSKL------------------PAE----------------------------- 73
GFLLNLDSKL P E
Sbjct: 61 GFLLNLDSKLSPRTLCTVVFGLDCILESPGEPKKLLMPASHPLEILKSLSEDAAFALGFL 120
Query: 74 -------LATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPP 126
LATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPP
Sbjct: 121 KLPRPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPP 180
Query: 127 FGIKGQ 132
FGIKGQ
Sbjct: 181 FGIKGQ 186
>gi|28373082 sialyltransferase 6 isoform g [Homo sapiens]
Length = 359
Score = 228 bits (582), Expect = 1e-60
Identities = 115/132 (87%), Positives = 116/132 (87%), Gaps = 16/132 (12%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS +YDRL
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS----------------KYDRL 44
Query: 61 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 120
GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI
Sbjct: 45 GFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARI 104
Query: 121 REFVPPFGIKGQ 132
REFVPPFGIKGQ
Sbjct: 105 REFVPPFGIKGQ 116
>gi|28373068 sialyltransferase 6 isoform a [Homo sapiens]
Length = 444
Score = 227 bits (578), Expect = 4e-60
Identities = 130/201 (64%), Positives = 131/201 (65%), Gaps = 69/201 (34%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS---------------NSVVLS 45
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS +SVVLS
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
Query: 46 FDSAGQTLGSEYDRLGFLLNLDSKL------------------PAE-------------- 73
FDSAGQTLGSEYDRLGFLLNLDSKL P E
Sbjct: 61 FDSAGQTLGSEYDRLGFLLNLDSKLSPRTLCTVVFGLDCILESPGEPKKLLMPASHPLEI 120
Query: 74 ----------------------LATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLD 111
LATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLD
Sbjct: 121 LKSLSEDAAFALGFLKLPRPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLD 180
Query: 112 DSFRKWARIREFVPPFGIKGQ 132
DSFRKWARIREFVPPFGIKGQ
Sbjct: 181 DSFRKWARIREFVPPFGIKGQ 201
>gi|28373086 sialyltransferase 6 isoform i [Homo sapiens]
Length = 413
Score = 192 bits (487), Expect = 1e-49
Identities = 110/170 (64%), Positives = 113/170 (66%), Gaps = 38/170 (22%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSF-------------- 46
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS L F
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSKYDRLGFLLNLDSKLSPRTLC 60
Query: 47 ----------DSAGQT-------------LGSEYDRLGFLLN-LDSKLPAELATKYANFS 82
+S G+ L S + F L L PAELATKYANFS
Sbjct: 61 TVVFGLDCILESPGEPKKLLMPASHPLEILKSLSEDAAFALGFLKLPRPAELATKYANFS 120
Query: 83 EGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 132
EGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ
Sbjct: 121 EGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 170
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 30.0 bits (66), Expect = 0.83
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 38 DSNSVVLSFDSAGQTL--GSEYD----RLGFLL--NLDSKLPAELATKYANFSEGACKPG 89
+ + V+L F +G + S Y RLG +L N D L EL TKYAN + G C
Sbjct: 155 NGHPVLLPFSQSGVLIQQSSSYTKVEARLGLVLMWNHDDSLLLELDTKYANKTCGLCGDF 214
Query: 90 YASALMTAIFPRFSKPAPM 108
+++ + +K PM
Sbjct: 215 NGMPVVSELLSHNTKLTPM 233
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 30.0 bits (66), Expect = 0.83
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 38 DSNSVVLSFDSAGQTL--GSEYD----RLGFLL--NLDSKLPAELATKYANFSEGACKPG 89
+ + V+L F +G + S Y RLG +L N D L EL TKYAN + G C
Sbjct: 155 NGHPVLLPFSQSGVLIQQSSSYTKVEARLGLVLMWNHDDSLLLELDTKYANKTCGLCGDF 214
Query: 90 YASALMTAIFPRFSKPAPM 108
+++ + +K PM
Sbjct: 215 NGMPVVSELLSHNTKLTPM 233
>gi|17998700 phosphatidylinositol glycan anchor biosynthesis, class
U [Homo sapiens]
Length = 435
Score = 28.9 bits (63), Expect = 1.9
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 6 FVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSN---SVVLSFDSAGQTLGSEY 57
F+RN+ + C+ +V L+ W L + +SN ++ L+F+ L S+Y
Sbjct: 351 FLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDY 405
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 27.7 bits (60), Expect = 4.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 134 LDAQYPARERVSAEAGESSRH 154
L A +PA+E +S +AG+SS H
Sbjct: 592 LQAWHPAKEMISKQAGDSSSH 612
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 27.7 bits (60), Expect = 4.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 134 LDAQYPARERVSAEAGESSRH 154
L A +PA+E +S +AG+SS H
Sbjct: 592 LQAWHPAKEMISKQAGDSSSH 612
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 27.3 bits (59), Expect = 5.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 83 EGACKPGYASALMTAIFPRFSKPAPMFLDD 112
EG PG AS TA+FPR ++P F D
Sbjct: 157 EGLGPPGPASLGTTALFPRKAQPPQAFRGD 186
>gi|4507043 solute carrier family 6 member 4 [Homo sapiens]
Length = 630
Score = 26.9 bits (58), Expect = 7.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 12 LALCLFLVLGFLYYSAWK 29
LALC+ L+ +Y+S WK
Sbjct: 255 LALCIMLIFTVIYFSIWK 272
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,779,791
Number of Sequences: 37866
Number of extensions: 233476
Number of successful extensions: 666
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 22
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.