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Search of human proteins with 28144908
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28144908 clarin 1 isoform a [Homo sapiens]
(232 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28144908 clarin 1 isoform a [Homo sapiens] 472 e-133
gi|16506281 clarin 1 isoform c [Homo sapiens] 215 3e-56
gi|150010645 clarin 2 [Homo sapiens] 162 2e-40
gi|22748685 clarin 3 [Homo sapiens] 80 1e-15
gi|239754660 PREDICTED: hypothetical protein [Homo sapiens] 30 2.3
gi|239749194 PREDICTED: hypothetical protein XP_002346946 [Homo ... 30 2.3
gi|239743274 PREDICTED: hypothetical protein XP_002342783 [Homo ... 30 2.3
gi|239508955 PREDICTED: hypothetical protein [Homo sapiens] 30 2.3
gi|90403614 solute carrier family 4, sodium bicarbonate cotransp... 28 8.7
gi|90568034 solute carrier family 4, sodium bicarbonate cotransp... 28 8.7
>gi|28144908 clarin 1 isoform a [Homo sapiens]
Length = 232
Score = 472 bits (1214), Expect = e-133
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MPSQQKKIIFCMAGVFSFACALGVVTALGTPLWIKATVLCKTGALLVNASGQELDKFMGE 60
MPSQQKKIIFCMAGVFSFACALGVVTALGTPLWIKATVLCKTGALLVNASGQELDKFMGE
Sbjct: 1 MPSQQKKIIFCMAGVFSFACALGVVTALGTPLWIKATVLCKTGALLVNASGQELDKFMGE 60
Query: 61 MQYGLFHGEGVRQCGLGARPFRFSFFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFM 120
MQYGLFHGEGVRQCGLGARPFRFSFFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFM
Sbjct: 61 MQYGLFHGEGVRQCGLGARPFRFSFFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFM 120
Query: 121 YNAFGKPFETLHGPLGLYLLSFISGSCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKT 180
YNAFGKPFETLHGPLGLYLLSFISGSCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKT
Sbjct: 121 YNAFGKPFETLHGPLGLYLLSFISGSCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKT 180
Query: 181 QSEKYTTSFWVIFFCFFVHFLNGLLIRLAGFQFPFAKSKDAETTNVAADLMY 232
QSEKYTTSFWVIFFCFFVHFLNGLLIRLAGFQFPFAKSKDAETTNVAADLMY
Sbjct: 181 QSEKYTTSFWVIFFCFFVHFLNGLLIRLAGFQFPFAKSKDAETTNVAADLMY 232
>gi|16506281 clarin 1 isoform c [Homo sapiens]
Length = 120
Score = 215 bits (547), Expect = 3e-56
Identities = 105/106 (99%), Positives = 106/106 (100%)
Query: 86 FPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLSFISG 145
FPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLSFISG
Sbjct: 10 FPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLSFISG 69
Query: 146 SCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKTQSEKYTTSFWV 191
SCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKTQSEKYTTSFW+
Sbjct: 70 SCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKTQSEKYTTSFWL 115
>gi|150010645 clarin 2 [Homo sapiens]
Length = 232
Score = 162 bits (411), Expect = 2e-40
Identities = 81/232 (34%), Positives = 131/232 (56%)
Query: 1 MPSQQKKIIFCMAGVFSFACALGVVTALGTPLWIKATVLCKTGALLVNASGQELDKFMGE 60
MP KK + +A + SF+ + ++ AL P W+ +LC+TG LVNA+ +EL KF+G+
Sbjct: 1 MPGWFKKAWYGLASLLSFSSFILIIVALVVPHWLSGKILCQTGVDLVNATDRELVKFIGD 60
Query: 61 MQYGLFHGEGVRQCGLGARPFRFSFFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFM 120
+ YGLF G VRQCGLG R +F+ FP L+K + +HV ++L + + L +V F +
Sbjct: 61 IYYGLFRGCKVRQCGLGGRQSQFTIFPHLVKELNAGLHVMILLLLFLALALALVSMGFAI 120
Query: 121 YNAFGKPFETLHGPLGLYLLSFISGSCGCLVMILFASEVKIHHLSEKIANYKEGTYVYKT 180
N P+ + GP G+ L + ++G L + F + VK H L+E+IAN++E + +
Sbjct: 121 LNMIQVPYRAVSGPGGICLWNVLAGGVVALAIASFVAAVKFHDLTERIANFQEKLFQFVV 180
Query: 181 QSEKYTTSFWVIFFCFFVHFLNGLLIRLAGFQFPFAKSKDAETTNVAADLMY 232
E+Y SFW+ H N +++ ++ P K+K E T A D++Y
Sbjct: 181 VEEQYEESFWICVASASAHAANLVVVAISQIPLPEIKTKIEEATVTAEDILY 232
>gi|22748685 clarin 3 [Homo sapiens]
Length = 226
Score = 80.1 bits (196), Expect = 1e-15
Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 12/208 (5%)
Query: 1 MPSQQKKIIFCMAGVFSFACALGVVTALGTPLWIKATVLCKTGALLVNASGQELDKFMGE 60
MP+ +K ++F + S + + + LGT WI +T+ + A ++G
Sbjct: 1 MPTTKKTLMFLSSFFTSLGSFIVICSILGTQAWITSTIAVRDSA----SNGSIF------ 50
Query: 61 MQYGLFHGEGVRQC--GLGARPFRFSFFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAF 118
+ YGLF GE + GL +F+ L + ++H ILF + ++ +++ + F
Sbjct: 51 ITYGLFRGESSEELSHGLAEPKKKFAVLEILNNSSQKTLHSVTILFLVLSLITSLLSSGF 110
Query: 119 FMYNAFGKPFETLHGPLGLYLLSFISGSCGCLVMILFASEVKIHHLSEKIANYKEGTYVY 178
YN+ P++T GP G+Y + + S + MILF + + + LSE++
Sbjct: 111 TFYNSISNPYQTFLGPTGVYTWNGLGASFVFVTMILFVANTQSNQLSEELFQMLYPATTS 170
Query: 179 KTQSEKYTTSFWVIFFCFFVHFLNGLLI 206
K + Y SFW+I ++ + +I
Sbjct: 171 KGTTHSYGYSFWLILLVILLNIVTVTII 198
>gi|239754660 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 29.6 bits (65), Expect = 2.3
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 91 KAIPVSIHV---NVILFSAILIVLTMVGTAFFMYNAFGKPF-ETLHGPLGLYLLSFISGS 146
K P+SI++ V L SA+ + T F M + F T L +SF +G+
Sbjct: 64 KPRPLSIYIILGRVFLLSAVFLAFV---TTFIMMPFASEFFPRTWKQNFVLACISFFTGA 120
Query: 147 CGCLVMILFASEVK 160
C L ++L A E+K
Sbjct: 121 CAFLALVLHALEIK 134
>gi|239749194 PREDICTED: hypothetical protein XP_002346946 [Homo
sapiens]
Length = 221
Score = 29.6 bits (65), Expect = 2.3
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 91 KAIPVSIHV---NVILFSAILIVLTMVGTAFFMYNAFGKPF-ETLHGPLGLYLLSFISGS 146
K P+SI++ V L SA+ + T F M + F T L +SF +G+
Sbjct: 64 KPRPLSIYIILGRVFLLSAVFLAFV---TTFIMMPFASEFFPRTWKQNFVLACISFFTGA 120
Query: 147 CGCLVMILFASEVK 160
C L ++L A E+K
Sbjct: 121 CAFLALVLHALEIK 134
>gi|239743274 PREDICTED: hypothetical protein XP_002342783 [Homo
sapiens]
Length = 221
Score = 29.6 bits (65), Expect = 2.3
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 91 KAIPVSIHV---NVILFSAILIVLTMVGTAFFMYNAFGKPF-ETLHGPLGLYLLSFISGS 146
K P+SI++ V L SA+ + T F M + F T L +SF +G+
Sbjct: 64 KPRPLSIYIILGRVFLLSAVFLAFV---TTFIMMPFASEFFPRTWKQNFVLACISFFTGA 120
Query: 147 CGCLVMILFASEVK 160
C L ++L A E+K
Sbjct: 121 CAFLALVLHALEIK 134
>gi|239508955 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 29.6 bits (65), Expect = 2.3
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 91 KAIPVSIHV---NVILFSAILIVLTMVGTAFFMYNAFGKPF-ETLHGPLGLYLLSFISGS 146
K P+SI++ V L SA+ + T F M + F T L +SF +G+
Sbjct: 64 KPRPLSIYIILGRVFLLSAVFLAFV---TTFIMMPFASEFFPRTWKQNFVLACISFFTGA 120
Query: 147 CGCLVMILFASEVK 160
C L ++L A E+K
Sbjct: 121 CAFLALVLHALEIK 134
>gi|90403614 solute carrier family 4, sodium bicarbonate
cotransporter, member 8 isoform a [Homo sapiens]
Length = 1093
Score = 27.7 bits (60), Expect = 8.7
Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 19 ACALGVVTALGTPLWIKATVLCKTGALLVNASGQ-----ELDKFMGEMQYGLFHGEGVRQ 73
A LGV + +G P ++ ATVL T + + E KF+G + V
Sbjct: 829 AIMLGVCSIMGLPWFVAATVLSITHVNSLKLESECSAPGEQPKFLG------IREQRVTG 882
Query: 74 CGLGARPFRFSFFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFF-MYNAFGKPFE--- 129
+ F +LK IP+ + V L+ V ++ G FF FG P +
Sbjct: 883 LMIFVLMGCSVFMTAILKFIPMPVLYGVFLYMG---VSSLQGIQFFDRLKLFGMPAKHQP 939
Query: 130 ----TLHGPL-GLYLLSFISGSCGCLVMILFASEVKI 161
H PL ++L + I +C L+ ++ AS I
Sbjct: 940 DFIYLRHVPLRKVHLFTLIQLTCLVLLWVIKASPAAI 976
>gi|90568034 solute carrier family 4, sodium bicarbonate
cotransporter, member 8 isoform b [Homo sapiens]
Length = 1044
Score = 27.7 bits (60), Expect = 8.7
Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 19 ACALGVVTALGTPLWIKATVLCKTGALLVNASGQ-----ELDKFMGEMQYGLFHGEGVRQ 73
A LGV + +G P ++ ATVL T + + E KF+G + V
Sbjct: 829 AIMLGVCSIMGLPWFVAATVLSITHVNSLKLESECSAPGEQPKFLG------IREQRVTG 882
Query: 74 CGLGARPFRFSFFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFF-MYNAFGKPFE--- 129
+ F +LK IP+ + V L+ V ++ G FF FG P +
Sbjct: 883 LMIFVLMGCSVFMTAILKFIPMPVLYGVFLYMG---VSSLQGIQFFDRLKLFGMPAKHQP 939
Query: 130 ----TLHGPL-GLYLLSFISGSCGCLVMILFASEVKI 161
H PL ++L + I +C L+ ++ AS I
Sbjct: 940 DFIYLRHVPLRKVHLFTLIQLTCLVLLWVIKASPAAI 976
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.143 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,980,389
Number of Sequences: 37866
Number of extensions: 313447
Number of successful extensions: 847
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 10
length of query: 232
length of database: 18,247,518
effective HSP length: 99
effective length of query: 133
effective length of database: 14,498,784
effective search space: 1928338272
effective search space used: 1928338272
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.