Search of human proteins with 27734895

Search of human proteins with 27734895

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27734895 hypothetical protein LOC205428 isoform a [Homo
sapiens]
         (430 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|27734895 hypothetical protein LOC205428 isoform a [Homo sapiens]   882   0.0  
gi|197333863 hypothetical protein LOC205428 isoform b [Homo sapi...   444   e-125
gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo sapiens]   170   3e-42
gi|193804856 hypothetical protein LOC79742 isoform 2 [Homo sapiens]    47   3e-05
gi|195546915 hypothetical protein LOC125704 [Homo sapiens]             38   0.020
gi|37655175 zinc finger protein 26 [Homo sapiens]                      30   3.2  

>gi|27734895 hypothetical protein LOC205428 isoform a [Homo sapiens]
          Length = 430

 Score =  882 bits (2278), Expect = 0.0
 Identities = 430/430 (100%), Positives = 430/430 (100%)

Query: 1   MWRLVPPKLGRLSRSLKLAALGSLLVLMVLHSPSLLASWQRNELTDRRFLQLNKCPACFG 60
           MWRLVPPKLGRLSRSLKLAALGSLLVLMVLHSPSLLASWQRNELTDRRFLQLNKCPACFG
Sbjct: 1   MWRLVPPKLGRLSRSLKLAALGSLLVLMVLHSPSLLASWQRNELTDRRFLQLNKCPACFG 60

Query: 61  TSWCRRFLNGQVVFEAWGRLRLLDFLNVKNVYFAQYGEPREGGRRRVVLKRLGSQRELAQ 120
           TSWCRRFLNGQVVFEAWGRLRLLDFLNVKNVYFAQYGEPREGGRRRVVLKRLGSQRELAQ
Sbjct: 61  TSWCRRFLNGQVVFEAWGRLRLLDFLNVKNVYFAQYGEPREGGRRRVVLKRLGSQRELAQ 120

Query: 121 LDQSICKRATGRPRCDLLQAMPRTEFARLNGDVRLLTPEAVEGWSDLVHCPSQRLLDRLV 180
           LDQSICKRATGRPRCDLLQAMPRTEFARLNGDVRLLTPEAVEGWSDLVHCPSQRLLDRLV
Sbjct: 121 LDQSICKRATGRPRCDLLQAMPRTEFARLNGDVRLLTPEAVEGWSDLVHCPSQRLLDRLV 180

Query: 181 RRYAETKDSGSFLLRNLKDSERMQLLLTLAFNPEPLVLQSFPSDEGWPFAKYLGACGRMV 240
           RRYAETKDSGSFLLRNLKDSERMQLLLTLAFNPEPLVLQSFPSDEGWPFAKYLGACGRMV
Sbjct: 181 RRYAETKDSGSFLLRNLKDSERMQLLLTLAFNPEPLVLQSFPSDEGWPFAKYLGACGRMV 240

Query: 241 AVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDG 300
           AVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDG
Sbjct: 241 AVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDG 300

Query: 301 KVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDDCDKEACLSFSKEILCARATVDHNY 360
           KVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDDCDKEACLSFSKEILCARATVDHNY
Sbjct: 301 KVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDDCDKEACLSFSKEILCARATVDHNY 360

Query: 361 YAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLEALLDECANPKKRYGRFQAAKELRE 420
           YAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLEALLDECANPKKRYGRFQAAKELRE
Sbjct: 361 YAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLEALLDECANPKKRYGRFQAAKELRE 420

Query: 421 YLAQLSNNVR 430
           YLAQLSNNVR
Sbjct: 421 YLAQLSNNVR 430


>gi|197333863 hypothetical protein LOC205428 isoform b [Homo
           sapiens]
          Length = 221

 Score =  444 bits (1143), Expect = e-125
 Identities = 212/214 (99%), Positives = 213/214 (99%)

Query: 217 VLQSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTN 276
           V+ SFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTN
Sbjct: 8   VVGSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTN 67

Query: 277 NDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDD 336
           NDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDD
Sbjct: 68  NDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDD 127

Query: 337 CDKEACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLE 396
           CDKEACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLE
Sbjct: 128 CDKEACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLE 187

Query: 397 ALLDECANPKKRYGRFQAAKELREYLAQLSNNVR 430
           ALLDECANPKKRYGRFQAAKELREYLAQLSNNVR
Sbjct: 188 ALLDECANPKKRYGRFQAAKELREYLAQLSNNVR 221


>gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo sapiens]
          Length = 433

 Score =  170 bits (430), Expect = 3e-42
 Identities = 123/365 (33%), Positives = 184/365 (50%), Gaps = 15/365 (4%)

Query: 10  GRLSRSLKLAALGSLLVLMVLHSPSLLASWQRNELTDRRFLQLNKCPACFGTSWCRRFLN 69
           G L+  L ++AL     L      SL+   + +    R FL L+KC AC GTS C++F  
Sbjct: 15  GWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKCNACIGTSICKKFFK 74

Query: 70  GQVVFEAWGRLRLLDFLNVKNVYFAQYGEPREGGRRRVVLKRLGSQRELAQLDQSICKRA 129
            ++  + W    L    +    Y A Y +  +  R  V + RL S+ +    D+ IC  A
Sbjct: 75  EEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRP-VEIFRLVSKYQNEISDRRICASA 133

Query: 130 TGRPRCDLLQAMPRTEFARLNGDVRLLTPEAVEGW-SDLVHCPSQRLLDRLVRRYAETKD 188
           +    C + + + +TE  +     + LTP+ V+G  S L+ CPSQRLLDR+VRRYAE  D
Sbjct: 134 SAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQGLASPLLRCPSQRLLDRVVRRYAEVAD 193

Query: 189 SGSFLLRNLKDSERMQLLLTLAFNPEPLVLQSFPSDEGWPFAKYLGACGRMVAVNYVGEE 248
           +GS  + +  D ++++LL TLA N  P++LQ FP  EGWP  KYLG+CGR + V+     
Sbjct: 194 AGSIFMDHFTDRDKLRLLYTLAVNSHPILLQIFPGAEGWPLPKYLGSCGRFL-VSTSTRP 252

Query: 249 LWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAE 308
           L  +++AP ++  DLA+QL+ + E L +ND  +  Y   +    F V   +G + I DA 
Sbjct: 253 LQEFYDAPPDQAADLAYQLLGVLESLRSNDLNYFFYFTHIDAGMFGVF-NNGHLFIRDAS 311

Query: 309 NVLVADKRLIRQ---NKPENWDVWYESKFDDCDKEACLSFSKEILCARATVDHNYYAVCQ 365
            V V DK+   Q      EN D++       C    C +      C   +   +   VCQ
Sbjct: 312 AVGVIDKQEGSQEANRAGENKDIF------SCLVSGCQAQLPS--CESISEKQSLVLVCQ 363

Query: 366 NLLSR 370
            LL R
Sbjct: 364 KLLPR 368


>gi|193804856 hypothetical protein LOC79742 isoform 2 [Homo sapiens]
          Length = 182

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 1/153 (0%)

Query: 10  GRLSRSLKLAALGSLLVLMVLHSPSLLASWQRNELTDRRFLQLNKCPACFGTSWCRRFLN 69
           G L+  L ++AL     L      SL+   + +    R FL L+KC AC GTS C++F  
Sbjct: 15  GWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKCNACIGTSICKKFFK 74

Query: 70  GQVVFEAWGRLRLLDFLNVKNVYFAQYGEPREGGRRRVVLKRLGSQRELAQLDQSICKRA 129
            ++  + W    L    +    Y A Y +  +   R V + RL S+ +    D+ IC  A
Sbjct: 75  EEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIW-RPVEIFRLVSKYQNEISDRRICASA 133

Query: 130 TGRPRCDLLQAMPRTEFARLNGDVRLLTPEAVE 162
           +    C + + + +TE  +     + LTP+ V+
Sbjct: 134 SAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQ 166


>gi|195546915 hypothetical protein LOC125704 [Homo sapiens]
          Length = 419

 Score = 37.7 bits (86), Expect = 0.020
 Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 24/185 (12%)

Query: 233 LGACGRMVAVNYVG------EELWSYFNAPWEKRVDLAWQLMEIAEQLTN------NDFE 280
           LG+CG   AV ++         L+    AP       A  + +IA    +      +DF 
Sbjct: 213 LGSCGHFYAVEFLAAGSPHHRALFPLDRAPGAPGGGQAKAISDIALSFLDMVNHFDSDFS 272

Query: 281 FALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDDCDKE 340
             L+L D+  +NFA+   D  V+ +D +      K  +R+   +N     +  F DC   
Sbjct: 273 HRLHLCDIKPENFAI-RSDFTVVAIDVDMAFFEPK--MREILEQNCTGDEDCNFFDCFSR 329

Query: 341 ACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLEALLD 400
             L  +K   C    V++N   +C  +  RH  W       L           +L+  + 
Sbjct: 330 CDLRVNK---CGAQRVNNNLQVICDKIF-RH--WFSAP---LKSSAVSFQLQLQLQEAVQ 380

Query: 401 ECANP 405
           ECA+P
Sbjct: 381 ECADP 385


>gi|37655175 zinc finger protein 26 [Homo sapiens]
          Length = 533

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 265 WQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPE 324
           WQL++  ++    D     Y   +S       P D    +   E+  + + ++ RQ+ P+
Sbjct: 28  WQLLDSTQKYLYRDVILENYHNLISVGYHGTKP-DLIFKLEQGEDPWIINAKISRQSCPD 86

Query: 325 NWDVWYESKFDDCD 338
            W+ WY++  D+ +
Sbjct: 87  GWEEWYQNNQDELE 100


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,656,324
Number of Sequences: 37866
Number of extensions: 720581
Number of successful extensions: 1350
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 6
length of query: 430
length of database: 18,247,518
effective HSP length: 105
effective length of query: 325
effective length of database: 14,271,588
effective search space: 4638266100
effective search space used: 4638266100
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.