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Search of human proteins with 239757124
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757124 PREDICTED: hypothetical protein [Homo sapiens]
(106 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757124 PREDICTED: hypothetical protein [Homo sapiens] 225 7e-60
gi|169213522 PREDICTED: hypothetical protein [Homo sapiens] 225 7e-60
gi|113428448 PREDICTED: hypothetical protein [Homo sapiens] 187 1e-48
gi|14670354 general transcription factor II, i isoform 3 [Homo s... 33 0.038
gi|14670352 general transcription factor II, i isoform 2 [Homo s... 33 0.038
gi|14670350 general transcription factor II, i isoform 1 [Homo s... 33 0.038
gi|169881252 general transcription factor II, i isoform 4 [Homo ... 33 0.038
gi|48762700 GTF2I repeat domain containing 2 [Homo sapiens] 31 0.25
gi|51241788 GTF2I repeat domain containing 2B [Homo sapiens] 31 0.25
gi|239753271 PREDICTED: similar to ankyrin repeat domain 36 [Hom... 28 2.1
>gi|239757124 PREDICTED: hypothetical protein [Homo sapiens]
Length = 106
Score = 225 bits (573), Expect = 7e-60
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV 60
MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV
Sbjct: 1 MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV 60
Query: 61 ERDISVLSVSTPFRIPLNHFLYSIRTWKFEWRGPCYIQSLVWEKGS 106
ERDISVLSVSTPFRIPLNHFLYSIRTWKFEWRGPCYIQSLVWEKGS
Sbjct: 61 ERDISVLSVSTPFRIPLNHFLYSIRTWKFEWRGPCYIQSLVWEKGS 106
>gi|169213522 PREDICTED: hypothetical protein [Homo sapiens]
Length = 106
Score = 225 bits (573), Expect = 7e-60
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV 60
MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV
Sbjct: 1 MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV 60
Query: 61 ERDISVLSVSTPFRIPLNHFLYSIRTWKFEWRGPCYIQSLVWEKGS 106
ERDISVLSVSTPFRIPLNHFLYSIRTWKFEWRGPCYIQSLVWEKGS
Sbjct: 61 ERDISVLSVSTPFRIPLNHFLYSIRTWKFEWRGPCYIQSLVWEKGS 106
>gi|113428448 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 187 bits (476), Expect = 1e-48
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV 60
MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV
Sbjct: 1 MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV 60
Query: 61 ERDISVLSVSTPFRIPLNHFLYSIRTWKFE 90
ERDISVLSVSTPFRIPLNHFLYSIRTWKFE
Sbjct: 61 ERDISVLSVSTPFRIPLNHFLYSIRTWKFE 90
>gi|14670354 general transcription factor II, i isoform 3 [Homo
sapiens]
Length = 977
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 5 CLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVVERDI 64
C Y + L S ++P E K R ++ +G+ + KH E DL L W++E
Sbjct: 121 CFCYGKALGKSTVVPVPYE--KMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKA 178
Query: 65 SV-LSVSTPFRIPLNH 79
+ + PF P H
Sbjct: 179 GISFIIKRPFLEPKKH 194
>gi|14670352 general transcription factor II, i isoform 2 [Homo
sapiens]
Length = 978
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 5 CLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVVERDI 64
C Y + L S ++P E K R ++ +G+ + KH E DL L W++E
Sbjct: 121 CFCYGKALGKSTVVPVPYE--KMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKA 178
Query: 65 SV-LSVSTPFRIPLNH 79
+ + PF P H
Sbjct: 179 GISFIIKRPFLEPKKH 194
>gi|14670350 general transcription factor II, i isoform 1 [Homo
sapiens]
Length = 998
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 5 CLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVVERDI 64
C Y + L S ++P E K R ++ +G+ + KH E DL L W++E
Sbjct: 121 CFCYGKALGKSTVVPVPYE--KMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKA 178
Query: 65 SV-LSVSTPFRIPLNH 79
+ + PF P H
Sbjct: 179 GISFIIKRPFLEPKKH 194
>gi|169881252 general transcription factor II, i isoform 4 [Homo
sapiens]
Length = 957
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 5 CLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVVERDI 64
C Y + L S ++P E K R ++ +G+ + KH E DL L W++E
Sbjct: 121 CFCYGKALGKSTVVPVPYE--KMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKA 178
Query: 65 SV-LSVSTPFRIPLNH 79
+ + PF P H
Sbjct: 179 GISFIIKRPFLEPKKH 194
>gi|48762700 GTF2I repeat domain containing 2 [Homo sapiens]
Length = 949
Score = 30.8 bits (68), Expect = 0.25
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 5 CLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVVERDI 64
C Y + L T+ ++P E K R ++ +G+ + +H E DL L W++E
Sbjct: 116 CFCYGKALGTTVMVPVPYE--KMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKA 173
Query: 65 SV-LSVSTPFRIP 76
+ ++ PF P
Sbjct: 174 GISFIINRPFLGP 186
>gi|51241788 GTF2I repeat domain containing 2B [Homo sapiens]
Length = 949
Score = 30.8 bits (68), Expect = 0.25
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 5 CLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVVERDI 64
C Y + L T+ ++P E K R ++ +G+ + +H E DL L W++E
Sbjct: 116 CFCYGKALGTTVMVPVPYE--KMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKA 173
Query: 65 SV-LSVSTPFRIP 76
+ ++ PF P
Sbjct: 174 GISFIINRPFLGP 186
>gi|239753271 PREDICTED: similar to ankyrin repeat domain 36 [Homo
sapiens]
Length = 501
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 15/58 (25%)
Query: 35 ASRGMRCRIPIKHSEGADLTVLVWVVERDISVLSVSTPFRIPLNHFLYSIRTWKFEWR 92
A+ G + + H +G D + TPF + + H+ + R W++ WR
Sbjct: 167 AATGGQASVSTSHQQGED---------------RIRTPFSVSVLHYAQNHRIWRWMWR 209
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.137 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,288,400
Number of Sequences: 37866
Number of extensions: 155108
Number of successful extensions: 405
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 10
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.