Search of human proteins with 239757024

Search of human proteins with 239757024

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239757024 PREDICTED: hypothetical protein [Homo sapiens]
         (89 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757024 PREDICTED: hypothetical protein [Homo sapiens]           176   3e-45
gi|239751545 PREDICTED: hypothetical protein [Homo sapiens]           176   3e-45
gi|239746057 PREDICTED: hypothetical protein XP_002343638 [Homo ...   176   3e-45
gi|11141903 FAST kinase domains 5 [Homo sapiens]                       29   0.91 
gi|7019519 proprotein convertase subtilisin/kexin type 1 inhibit...    29   0.91 
gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo ...    27   2.6  
gi|163659920 pannexin 2 isoform 1 [Homo sapiens]                       27   2.6  
gi|237757297 pannexin 2 isoform 2 [Homo sapiens]                       27   2.6  
gi|112382270 matrix metalloproteinase 17 preproprotein [Homo sap...    27   2.6  
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]                26   7.7  

>gi|239757024 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 89

 Score =  176 bits (447), Expect = 3e-45
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MRALLLLFLWREVSPSALFERCAEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAA 60
          MRALLLLFLWREVSPSALFERCAEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAA
Sbjct: 1  MRALLLLFLWREVSPSALFERCAEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAA 60

Query: 61 VVQSPRCSLKVVLLSHRRRRCRWLAAGTR 89
          VVQSPRCSLKVVLLSHRRRRCRWLAAGTR
Sbjct: 61 VVQSPRCSLKVVLLSHRRRRCRWLAAGTR 89


>gi|239751545 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 89

 Score =  176 bits (447), Expect = 3e-45
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MRALLLLFLWREVSPSALFERCAEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAA 60
          MRALLLLFLWREVSPSALFERCAEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAA
Sbjct: 1  MRALLLLFLWREVSPSALFERCAEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAA 60

Query: 61 VVQSPRCSLKVVLLSHRRRRCRWLAAGTR 89
          VVQSPRCSLKVVLLSHRRRRCRWLAAGTR
Sbjct: 61 VVQSPRCSLKVVLLSHRRRRCRWLAAGTR 89


>gi|239746057 PREDICTED: hypothetical protein XP_002343638 [Homo
          sapiens]
          Length = 89

 Score =  176 bits (447), Expect = 3e-45
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MRALLLLFLWREVSPSALFERCAEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAA 60
          MRALLLLFLWREVSPSALFERCAEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAA
Sbjct: 1  MRALLLLFLWREVSPSALFERCAEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAA 60

Query: 61 VVQSPRCSLKVVLLSHRRRRCRWLAAGTR 89
          VVQSPRCSLKVVLLSHRRRRCRWLAAGTR
Sbjct: 61 VVQSPRCSLKVVLLSHRRRRCRWLAAGTR 89


>gi|11141903 FAST kinase domains 5 [Homo sapiens]
          Length = 764

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 39  GVLLTVRRSVGPAEVAGLARAAVVQSPRCSLKVVLLSHRRRRC 81
           G L  V    G  E+AGL  AA +Q+PR  L  V  ++R + C
Sbjct: 667 GFLCNVADKSGAMEMAGLCPAACMQTPRMKL-AVQFTNRNQYC 708


>gi|7019519 proprotein convertase subtilisin/kexin type 1
          inhibitor precursor [Homo sapiens]
          Length = 260

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 30/80 (37%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 4  LLLLFLWREVSPSALFER-CAEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAAVV 62
          LLLL L+R   P AL  R   E R      P   ETG     RRSV   E AG      V
Sbjct: 20 LLLLGLFRP--PPALCARPVKEPRGLSAASPPLAETGAPRRFRRSVPRGEAAG-----AV 72

Query: 63 QSPRCSLKVVLLSHRRRRCR 82
          Q    +L  +L + R+ R R
Sbjct: 73 QELARALAHLLEAERQERAR 92


>gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo
          sapiens]
          Length = 101

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 13/61 (21%)

Query: 23 AEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAAVVQSPRCSLKVVLLSHRRRRCR 82
          AEQR+ GR+E  A + G++               A A  V+ PR +    L  HRR R R
Sbjct: 7  AEQRQQGREE--ALQFGLVFVES-----------APAPGVEWPRLAAAPALACHRRPRWR 53

Query: 83 W 83
          W
Sbjct: 54 W 54


>gi|163659920 pannexin 2 isoform 1 [Homo sapiens]
          Length = 677

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 33  PKAQETGVLLTVRRSVGPAEVAGLARAAVVQSPRCSLKVVLLSH 76
           P  +++GV  TV  S  PAE  G A   VV+ PR  +K +  S+
Sbjct: 395 PTVRDSGVQ-TVDPSANPAEPDGAAEPPVVKRPRKKMKWIPTSN 437


>gi|237757297 pannexin 2 isoform 2 [Homo sapiens]
          Length = 643

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 33  PKAQETGVLLTVRRSVGPAEVAGLARAAVVQSPRCSLKVVLLSH 76
           P  +++GV  TV  S  PAE  G A   VV+ PR  +K +  S+
Sbjct: 395 PTVRDSGVQ-TVDPSANPAEPDGAAEPPVVKRPRKKMKWIPTSN 437


>gi|112382270 matrix metalloproteinase 17 preproprotein [Homo
           sapiens]
          Length = 603

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 36  QETGVLLTVRRSVGPAEVAGL---ARAAVVQSPRCSLK--VVLLSHRRRR 80
           +E    +T  +  G  E  G+   A  A++++PRCSL    VL   RRRR
Sbjct: 76  EELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDLPVLTQARRRR 125


>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
          Length = 2017

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 7   LFLWREVSPSALFE--RCAEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAAVVQS 64
           L L +E    +LFE  R   Q +A R++ +A+   +LL      G  E+AGL +  +   
Sbjct: 902 LRLEKEALEGSLFEVQRQLAQLEARREQLEAEGQALLLAKETLTG--ELAGLRQQIIATQ 959

Query: 65  PRCSLKVVLLSHR 77
            + SL   L++ +
Sbjct: 960 EKASLDKELMAQK 972


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,297,860
Number of Sequences: 37866
Number of extensions: 110167
Number of successful extensions: 372
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 10
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.