Search of human proteins with 239756460

Search of human proteins with 239756460

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756460 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
         (68 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756460 PREDICTED: hypothetical protein isoform 2 [Homo sap...   148   8e-37
gi|239750988 PREDICTED: hypothetical protein XP_002347624 isofor...   148   8e-37
gi|239756462 PREDICTED: hypothetical protein isoform 1 [Homo sap...   119   7e-28
gi|239750990 PREDICTED: hypothetical protein XP_002347623 isofor...   119   7e-28
gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo ...    91   3e-19
gi|87196600 polyserase 3 [Homo sapiens]                                27   2.7  
gi|239747330 PREDICTED: similar to cytochrome c oxidase subunit ...    26   7.7  
gi|239741155 PREDICTED: similar to cytochrome c oxidase subunit ...    26   7.7  

>gi|239756460 PREDICTED: hypothetical protein isoform 2 [Homo
          sapiens]
          Length = 68

 Score =  148 bits (374), Expect = 8e-37
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MSKERVISAAGVGALVPMEWSIMLMEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRW 60
          MSKERVISAAGVGALVPMEWSIMLMEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRW
Sbjct: 1  MSKERVISAAGVGALVPMEWSIMLMEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRW 60

Query: 61 SRVPGPME 68
          SRVPGPME
Sbjct: 61 SRVPGPME 68


>gi|239750988 PREDICTED: hypothetical protein XP_002347624 isoform
          2 [Homo sapiens]
          Length = 68

 Score =  148 bits (374), Expect = 8e-37
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MSKERVISAAGVGALVPMEWSIMLMEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRW 60
          MSKERVISAAGVGALVPMEWSIMLMEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRW
Sbjct: 1  MSKERVISAAGVGALVPMEWSIMLMEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRW 60

Query: 61 SRVPGPME 68
          SRVPGPME
Sbjct: 61 SRVPGPME 68


>gi|239756462 PREDICTED: hypothetical protein isoform 1 [Homo
          sapiens]
          Length = 68

 Score =  119 bits (297), Expect = 7e-28
 Identities = 58/68 (85%), Positives = 58/68 (85%)

Query: 1  MSKERVISAAGVGALVPMEWSIMLMEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRW 60
          MSKERVISAAGVGALVPMEWSI     G   G  ADGAGPMEWGAEWSISADGAGRQCRW
Sbjct: 1  MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60

Query: 61 SRVPGPME 68
          SRVPGPME
Sbjct: 61 SRVPGPME 68


>gi|239750990 PREDICTED: hypothetical protein XP_002347623 isoform
          1 [Homo sapiens]
          Length = 68

 Score =  119 bits (297), Expect = 7e-28
 Identities = 58/68 (85%), Positives = 58/68 (85%)

Query: 1  MSKERVISAAGVGALVPMEWSIMLMEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRW 60
          MSKERVISAAGVGALVPMEWSI     G   G  ADGAGPMEWGAEWSISADGAGRQCRW
Sbjct: 1  MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60

Query: 61 SRVPGPME 68
          SRVPGPME
Sbjct: 61 SRVPGPME 68


>gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo
          sapiens]
          Length = 417

 Score = 90.5 bits (223), Expect = 3e-19
 Identities = 38/38 (100%), Positives = 38/38 (100%)

Query: 25 MEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRWSR 62
          MEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRWSR
Sbjct: 1  MEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRWSR 38


>gi|87196600 polyserase 3 [Homo sapiens]
          Length = 553

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 1   MSKERVISAAG--VGALVPMEWSIMLMEWGAEWGI 33
           +S+E V++AA   +G   P EWS+ L     EWG+
Sbjct: 331 VSEEAVLTAAHCFIGRQAPEEWSVGLGTRPEEWGL 365


>gi|239747330 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 20 WSIMLMEWGAEWGISADG-AGPMEW 43
          W+ +  + G EW +S DG   P EW
Sbjct: 53 WTYVATQIGIEWNLSPDGRVTPKEW 77


>gi|239741155 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 20 WSIMLMEWGAEWGISADG-AGPMEW 43
          W+ +  + G EW +S DG   P EW
Sbjct: 53 WTYVATQIGIEWNLSPDGRVTPKEW 77


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,293,290
Number of Sequences: 37866
Number of extensions: 122961
Number of successful extensions: 236
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 10
length of query: 68
length of database: 18,247,518
effective HSP length: 41
effective length of query: 27
effective length of database: 16,695,012
effective search space: 450765324
effective search space used: 450765324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.