Search of human proteins with 239754923

Search of human proteins with 239754923

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754923 PREDICTED: similar to slowmo homolog 1 [Homo
sapiens]
         (218 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754923 PREDICTED: similar to slowmo homolog 1 [Homo sapiens]    437   e-123
gi|239749466 PREDICTED: hypothetical protein XP_002347060 [Homo ...   275   3e-74
gi|239743604 PREDICTED: hypothetical protein XP_002342914 [Homo ...   275   3e-74
gi|215490114 slowmo homolog 1 isoform 1 [Homo sapiens]                136   2e-32
gi|38678528 slowmo homolog 1 isoform 1 [Homo sapiens]                 136   2e-32
gi|117553615 slowmo homolog 2 [Homo sapiens]                          104   5e-23
gi|239757995 PREDICTED: similar to hCG1747327, partial [Homo sap...    30   1.2  

>gi|239754923 PREDICTED: similar to slowmo homolog 1 [Homo sapiens]
          Length = 218

 Score =  437 bits (1123), Expect = e-123
 Identities = 218/218 (100%), Positives = 218/218 (100%)

Query: 1   MPACQGARSPSRTEATPVRERLGSSPVPSWSFPQWLGPDDTLLELYDVLISCGAVEIIKS 60
           MPACQGARSPSRTEATPVRERLGSSPVPSWSFPQWLGPDDTLLELYDVLISCGAVEIIKS
Sbjct: 1   MPACQGARSPSRTEATPVRERLGSSPVPSWSFPQWLGPDDTLLELYDVLISCGAVEIIKS 60

Query: 61  LYKHLFIFLQILNFPINIISRSEYVFDYPCDIAIEAAMRKYLNLMTIVLHRQHFLSIKWG 120
           LYKHLFIFLQILNFPINIISRSEYVFDYPCDIAIEAAMRKYLNLMTIVLHRQHFLSIKWG
Sbjct: 61  LYKHLFIFLQILNFPINIISRSEYVFDYPCDIAIEAAMRKYLNLMTIVLHRQHFLSIKWG 120

Query: 121 LLTLVKVMRPQILETSRILTYIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPH 180
           LLTLVKVMRPQILETSRILTYIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPH
Sbjct: 121 LLTLVKVMRPQILETSRILTYIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPH 180

Query: 181 LENLEITMLTQGAIITTSGITLGNHLESLTANIISSNP 218
           LENLEITMLTQGAIITTSGITLGNHLESLTANIISSNP
Sbjct: 181 LENLEITMLTQGAIITTSGITLGNHLESLTANIISSNP 218


>gi|239749466 PREDICTED: hypothetical protein XP_002347060 [Homo
           sapiens]
          Length = 184

 Score =  275 bits (702), Expect = 3e-74
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 81  RSEYVFDYPCDIAIEAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILT 140
           RSEYVFDYPCDIAIEAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILT
Sbjct: 47  RSEYVFDYPCDIAIEAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILT 106

Query: 141 YIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGI 200
           YIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGI
Sbjct: 107 YIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGI 166

Query: 201 TLGNHLESLTANIISSNP 218
           TLGNHLESLTANIISSNP
Sbjct: 167 TLGNHLESLTANIISSNP 184


>gi|239743604 PREDICTED: hypothetical protein XP_002342914 [Homo
           sapiens]
          Length = 184

 Score =  275 bits (702), Expect = 3e-74
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 81  RSEYVFDYPCDIAIEAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILT 140
           RSEYVFDYPCDIAIEAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILT
Sbjct: 47  RSEYVFDYPCDIAIEAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILT 106

Query: 141 YIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGI 200
           YIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGI
Sbjct: 107 YIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGI 166

Query: 201 TLGNHLESLTANIISSNP 218
           TLGNHLESLTANIISSNP
Sbjct: 167 TLGNHLESLTANIISSNP 184


>gi|215490114 slowmo homolog 1 isoform 1 [Homo sapiens]
          Length = 172

 Score =  136 bits (342), Expect = 2e-32
 Identities = 82/152 (53%), Positives = 100/152 (65%), Gaps = 21/152 (13%)

Query: 82  SEYVFDYPCDIAIEAAMRKYLNLMTIV----------------LHRQHFLSIKWGLLTLV 125
           SE+VF +P D  I+AAMRKY N M                   LH    LS +WGL +LV
Sbjct: 6   SEHVFGHPWDTVIQAAMRKYPNPMNPSVLGVDVLQRRVDGRGRLHSLRLLSTEWGLPSLV 65

Query: 126 KVMRPQILETSRILTYIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLE 185
           +     IL TSR LTYI+EH V+D V+KKMELC TN I ++N VSVN +L+YTPH EN E
Sbjct: 66  RA----ILGTSRTLTYIREHSVVDPVEKKMELCSTN-ITLTNLVSVNERLVYTPHPENPE 120

Query: 186 ITMLTQGAIITTSGITLGNHLESLTANIISSN 217
           +T+LTQ AIIT  GI+LG++LESL AN ISSN
Sbjct: 121 MTVLTQEAIITVKGISLGSYLESLMANTISSN 152


>gi|38678528 slowmo homolog 1 isoform 1 [Homo sapiens]
          Length = 172

 Score =  136 bits (342), Expect = 2e-32
 Identities = 82/152 (53%), Positives = 100/152 (65%), Gaps = 21/152 (13%)

Query: 82  SEYVFDYPCDIAIEAAMRKYLNLMTIV----------------LHRQHFLSIKWGLLTLV 125
           SE+VF +P D  I+AAMRKY N M                   LH    LS +WGL +LV
Sbjct: 6   SEHVFGHPWDTVIQAAMRKYPNPMNPSVLGVDVLQRRVDGRGRLHSLRLLSTEWGLPSLV 65

Query: 126 KVMRPQILETSRILTYIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLE 185
           +     IL TSR LTYI+EH V+D V+KKMELC TN I ++N VSVN +L+YTPH EN E
Sbjct: 66  RA----ILGTSRTLTYIREHSVVDPVEKKMELCSTN-ITLTNLVSVNERLVYTPHPENPE 120

Query: 186 ITMLTQGAIITTSGITLGNHLESLTANIISSN 217
           +T+LTQ AIIT  GI+LG++LESL AN ISSN
Sbjct: 121 MTVLTQEAIITVKGISLGSYLESLMANTISSN 152


>gi|117553615 slowmo homolog 2 [Homo sapiens]
          Length = 194

 Score =  104 bits (260), Expect = 5e-23
 Identities = 65/152 (42%), Positives = 93/152 (61%), Gaps = 21/152 (13%)

Query: 82  SEYVFDYPCDIAIEAAMRKYLNLM--TIV--------------LHRQHFLSIKWGLLTLV 125
           SE+VFD+P +    AAM+KY N M  ++V              LH    LS +WGL ++V
Sbjct: 6   SEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIV 65

Query: 126 KVMRPQILETSRILTYIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLE 185
           K     ++  +R  TY++EH V+D V+K MEL  TN I  +N VSV+ +L+Y PH ++ E
Sbjct: 66  K----SLIGAARTKTYVQEHSVVDPVEKTMELKSTN-ISFTNMVSVDERLIYKPHPQDPE 120

Query: 186 ITMLTQGAIITTSGITLGNHLESLTANIISSN 217
            T+LTQ AIIT  G++L ++LE L A+ ISSN
Sbjct: 121 KTVLTQEAIITVKGVSLSSYLEGLMASTISSN 152


>gi|239757995 PREDICTED: similar to hCG1747327, partial [Homo
           sapiens]
          Length = 1064

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 157 LCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGITLGNHLESLTANIISS 216
           L CTN+I  S           TP +  +           T SG T  N L SLT++I+SS
Sbjct: 476 LTCTNDI--STESLTTAMTSTTPVISAITPKTTVTSMTTTASGPTTTNTLSSLTSSILSS 533

Query: 217 NP 218
            P
Sbjct: 534 TP 535


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,597,797
Number of Sequences: 37866
Number of extensions: 310295
Number of successful extensions: 868
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 9
length of query: 218
length of database: 18,247,518
effective HSP length: 98
effective length of query: 120
effective length of database: 14,536,650
effective search space: 1744398000
effective search space used: 1744398000
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.