Guide to the Human Genome
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Search of human proteins with 239754692

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754692 PREDICTED: hypothetical protein [Homo sapiens]
         (108 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754692 PREDICTED: hypothetical protein [Homo sapiens]           230   2e-61
gi|239749236 PREDICTED: hypothetical protein XP_002346973 [Homo ...   230   2e-61
gi|239743328 PREDICTED: hypothetical protein XP_002342823 [Homo ...   230   2e-61
gi|239509011 PREDICTED: similar to zinc finger domain-related pr...   230   2e-61
gi|13128976 Yip1 domain family, member 2 [Homo sapiens]                35   0.013
gi|52317132 olfactory receptor, family 5, subfamily T, member 1 ...    30   0.42 
gi|156105681 presenilin 2 isoform 2 [Homo sapiens]                     28   2.1  
gi|156105679 presenilin 2 isoform 1 [Homo sapiens]                     28   2.1  
gi|4507033 solute carrier family 5 (sodium/glucose cotransporter...    27   2.7  
gi|223718060 opioid receptor, mu 1 isoform MOR-1G1 [Homo sapiens]      27   3.5  
gi|223718055 opioid receptor, mu 1 isoform MOR-1H [Homo sapiens]       27   3.5  
gi|117940060 opioid receptor, mu 1 isoform MOR-1 [Homo sapiens]        27   3.5  
gi|223718712 opioid receptor, mu 1 isoform MOR-1B5 [Homo sapiens]      27   3.5  
gi|223718719 opioid receptor, mu 1 isoform MOR-1B2 [Homo sapiens]      27   3.5  
gi|223718087 opioid receptor, mu 1 isoform MOR1-K1 [Homo sapiens]      27   3.5  
gi|223718077 opioid receptor, mu 1 isoform MOR-1B3 [Homo sapiens]      27   3.5  
gi|223718066 opioid receptor, mu 1 isoform MOR-1G2 [Homo sapiens]      27   3.5  
gi|223718716 opioid receptor, mu 1 isoform MOR-1B1 [Homo sapiens]      27   3.5  
gi|4504059 gonadotropin-releasing hormone receptor isoform 1 [Ho...    27   3.5  
gi|63477962 opioid receptor, delta 1 [Homo sapiens]                    27   3.5  
gi|117940058 opioid receptor, mu 1 isoform MOR-1A [Homo sapiens]       27   3.5  
gi|223717969 opioid receptor, mu 1 isoform MOR-1B4 [Homo sapiens]      27   3.5  
gi|117940055 opioid receptor, mu 1 isoform MOR-1O [Homo sapiens]       27   3.5  
gi|117940054 opioid receptor, mu 1 isoform MOR-1X [Homo sapiens]       27   3.5  
gi|31542658 fatty acyl CoA reductase 2 [Homo sapiens]                  27   3.5  
gi|53828742 olfactory receptor, family 2, subfamily T, member 3 ...    27   3.5  
gi|169168037 PREDICTED: hypothetical protein [Homo sapiens]            27   4.6  
gi|49227741 olfactory receptor, family 2, subfamily T, member 34...    27   4.6  
gi|31542671 liver regeneration p-53 related protein [Homo sapiens]     26   6.0  
gi|157743252 pecanex-like 3 [Homo sapiens]                             26   6.0  

>gi|239754692 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 108

 Score =  230 bits (586), Expect = 2e-61
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60
           MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL
Sbjct: 1   MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60

Query: 61  FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108
           FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL
Sbjct: 61  FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108


>gi|239749236 PREDICTED: hypothetical protein XP_002346973 [Homo
           sapiens]
          Length = 108

 Score =  230 bits (586), Expect = 2e-61
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60
           MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL
Sbjct: 1   MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60

Query: 61  FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108
           FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL
Sbjct: 61  FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108


>gi|239743328 PREDICTED: hypothetical protein XP_002342823 [Homo
           sapiens]
          Length = 108

 Score =  230 bits (586), Expect = 2e-61
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60
           MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL
Sbjct: 1   MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60

Query: 61  FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108
           FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL
Sbjct: 61  FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108


>gi|239509011 PREDICTED: similar to zinc finger domain-related
           protein TSRM [Homo sapiens]
          Length = 108

 Score =  230 bits (586), Expect = 2e-61
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60
           MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL
Sbjct: 1   MVGLLVHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCL 60

Query: 61  FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108
           FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL
Sbjct: 61  FLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWESKIGLEMRL 108


>gi|13128976 Yip1 domain family, member 2 [Homo sapiens]
          Length = 316

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 29  QRGVQANQTPVLFLHISCVY-YSLYLFFLFCCLFLIP---LEQKMTTSPLPYPCDNIHVT 84
           ++GVQ    P  FL   C+Y YSL++F     L+LIP   L+       L      +  T
Sbjct: 187 RKGVQERMGPYTFLETVCIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLSAAGLVFT 246

Query: 85  VWPLGEVLMETRM 97
           +WP+  V  +TR+
Sbjct: 247 LWPV--VREDTRL 257


>gi|52317132 olfactory receptor, family 5, subfamily T, member 1
           [Homo sapiens]
          Length = 326

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 6   VHTAATFNYSFRKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLF 57
           +HT ATF+ SF       C  ++ R V  N  P+L +  S  +    LFF F
Sbjct: 170 IHTVATFSLSF-------CGSNEIRHVFCNMPPLLAISCSDTHVIQLLFFYF 214


>gi|156105681 presenilin 2 isoform 2 [Homo sapiens]
          Length = 447

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 41  FLHISCVYYSLYLFFLFCCLFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWES 100
           F+H   +  SL L FLF  ++L  +  K     + YP   + +TVW  G V M    W+ 
Sbjct: 167 FIHGWLIMSSLMLLFLFTYIYLGEV-LKTYNVAMDYP--TLLLTVWNFGAVGMVCIHWKG 223

Query: 101 KIGLE 105
            + L+
Sbjct: 224 PLVLQ 228


>gi|156105679 presenilin 2 isoform 1 [Homo sapiens]
          Length = 448

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 41  FLHISCVYYSLYLFFLFCCLFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVLMETRMWES 100
           F+H   +  SL L FLF  ++L  +  K     + YP   + +TVW  G V M    W+ 
Sbjct: 167 FIHGWLIMSSLMLLFLFTYIYLGEV-LKTYNVAMDYP--TLLLTVWNFGAVGMVCIHWKG 223

Query: 101 KIGLE 105
            + L+
Sbjct: 224 PLVLQ 228


>gi|4507033 solute carrier family 5 (sodium/glucose cotransporter),
           member 2 [Homo sapiens]
          Length = 672

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 32  VQANQTPVLFLHISCVYYSLYLFFLFCCLFLIPLEQKMTTSPLP 75
           VQ +  P     +  +Y+++ LFF   C  L+ L   + T+P+P
Sbjct: 512 VQPSACPAFLCGVHYLYFAIVLFF---CSGLLTLTVSLCTAPIP 552


>gi|223718060 opioid receptor, mu 1 isoform MOR-1G1 [Homo sapiens]
          Length = 300

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
          +F + L   + TS LP+   N  +  WP G +L
Sbjct: 9  IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 41


>gi|223718055 opioid receptor, mu 1 isoform MOR-1H [Homo sapiens]
          Length = 493

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60  LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
           +F + L   + TS LP+   N  +  WP G +L
Sbjct: 202 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 234


>gi|117940060 opioid receptor, mu 1 isoform MOR-1 [Homo sapiens]
          Length = 400

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60  LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
           +F + L   + TS LP+   N  +  WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141


>gi|223718712 opioid receptor, mu 1 isoform MOR-1B5 [Homo sapiens]
          Length = 420

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60  LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
           +F + L   + TS LP+   N  +  WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141


>gi|223718719 opioid receptor, mu 1 isoform MOR-1B2 [Homo sapiens]
          Length = 397

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60  LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
           +F + L   + TS LP+   N  +  WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141


>gi|223718087 opioid receptor, mu 1 isoform MOR1-K1 [Homo sapiens]
          Length = 300

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
          +F + L   + TS LP+   N  +  WP G +L
Sbjct: 9  IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 41


>gi|223718077 opioid receptor, mu 1 isoform MOR-1B3 [Homo sapiens]
          Length = 403

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60  LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
           +F + L   + TS LP+   N  +  WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141


>gi|223718066 opioid receptor, mu 1 isoform MOR-1G2 [Homo sapiens]
          Length = 319

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60 LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
          +F + L   + TS LP+   N  +  WP G +L
Sbjct: 28 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 60


>gi|223718716 opioid receptor, mu 1 isoform MOR-1B1 [Homo sapiens]
          Length = 406

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60  LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
           +F + L   + TS LP+   N  +  WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141


>gi|4504059 gonadotropin-releasing hormone receptor isoform 1 [Homo
           sapiens]
          Length = 328

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 48  YYSLYLFFLFCCLFLIPL 65
           + + Y FF F CLF+IPL
Sbjct: 207 HQAFYNFFTFSCLFIIPL 224


>gi|63477962 opioid receptor, delta 1 [Homo sapiens]
          Length = 372

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60  LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
           +F + L   + TS LP+      +  WP GE+L
Sbjct: 88  IFNLALADALATSTLPFQSAKYLMETWPFGELL 120


>gi|117940058 opioid receptor, mu 1 isoform MOR-1A [Homo sapiens]
          Length = 392

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60  LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
           +F + L   + TS LP+   N  +  WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141


>gi|223717969 opioid receptor, mu 1 isoform MOR-1B4 [Homo sapiens]
          Length = 389

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60  LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
           +F + L   + TS LP+   N  +  WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141


>gi|117940055 opioid receptor, mu 1 isoform MOR-1O [Homo sapiens]
          Length = 418

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60  LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
           +F + L   + TS LP+   N  +  WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141


>gi|117940054 opioid receptor, mu 1 isoform MOR-1X [Homo sapiens]
          Length = 446

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 60  LFLIPLEQKMTTSPLPYPCDNIHVTVWPLGEVL 92
           +F + L   + TS LP+   N  +  WP G +L
Sbjct: 109 IFNLALADALATSTLPFQSVNYLMGTWPFGTIL 141


>gi|31542658 fatty acyl CoA reductase 2 [Homo sapiens]
          Length = 515

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 4   LLVHTAAT--FNYSFRKIRGLLCPQHKQRGVQANQTPVL--FLHISCVYYSLYLFFLFCC 59
           ++ H AAT  F+ + R    L     +Q  + A+Q P L  F+HIS  Y +  L  +   
Sbjct: 107 IIFHCAATVRFDDTLRHAVQLNVTATRQLLLMASQMPKLEAFIHISTAYSNCNLKHIDEV 166

Query: 60  LFLIPLEQKMTTSPLPYPCDNIHVTVWP 87
           ++  P+E K     L +  D I   + P
Sbjct: 167 IYPCPVEPKKIIDSLEWLDDAIIDEITP 194


>gi|53828742 olfactory receptor, family 2, subfamily T, member 3
           [Homo sapiens]
          Length = 318

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 15/75 (20%)

Query: 1   MVGLLVHTAATFNYSF---RKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLF 57
           MV  L+ T  T ++ F   RKI    C           +TP L L +SC   SLY   ++
Sbjct: 158 MVDGLLLTPITMSFPFCQSRKILSFFC-----------ETPAL-LKLSCSDVSLYKTLMY 205

Query: 58  CCLFLIPLEQKMTTS 72
            C  L+ L   M  S
Sbjct: 206 LCCILMLLAPIMVIS 220


>gi|169168037 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 246

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 45  SCVYYSLYLFFLFCCLFL---IPLEQKMTTSPLPYPCDNIHV 83
           +CVY  +Y++ L+ C+++   + +   M T    Y C  +HV
Sbjct: 125 TCVYIHVYMYTLYVCIYVYMCVCIHVYMHTYVHVYMCVCVHV 166


>gi|49227741 olfactory receptor, family 2, subfamily T, member 34
           [Homo sapiens]
          Length = 318

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 1   MVGLLVHTAATFNYSF---RKIRGLLCPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLF 57
           MV  L+ T  T ++ F   RKI    C           +TP L L +SC   SLY    +
Sbjct: 158 MVDGLLLTPITMSFPFCQSRKILSFFC-----------ETPAL-LKLSCSDVSLYKMLTY 205

Query: 58  CCLFLIPLEQKMTTS 72
            C  L+ L   M  S
Sbjct: 206 LCCILMLLTPIMVIS 220


>gi|31542671 liver regeneration p-53 related protein [Homo sapiens]
          Length = 540

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 48  YYSLYLFFLFCCLFLIP 64
           YY+LY   LFC  F IP
Sbjct: 101 YYTLYSVILFCVFFWIP 117


>gi|157743252 pecanex-like 3 [Homo sapiens]
          Length = 2034

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 24  CPQHKQRGVQANQTPVLFLHISCVYYSLYLFFLFCCLFLIPLEQKMTTSPLP 75
           C     + VQ +    +  H   + YS  ++F  CCL +  L+   +  P P
Sbjct: 831 CQYSLLKSVQPDAASPMHGHNWVIAYSRPVYFCICCLLIWLLDALGSAQPFP 882


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.331    0.143    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,303,800
Number of Sequences: 37866
Number of extensions: 177404
Number of successful extensions: 497
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 31
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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