Search of human proteins with 239753482

Search of human proteins with 239753482

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753482 PREDICTED: similar to HSPC300 [Homo sapiens]
         (85 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753482 PREDICTED: similar to HSPC300 [Homo sapiens]             172   5e-44
gi|27544939 chromosome 3 open reading frame 10 [Homo sapiens]         137   2e-33
gi|171906559 peripheral benzodiazepine receptor-associated prote...    30   0.41 
gi|51479152 ATP synthase, H+ transporting, mitochondrial F0 comp...    28   1.2  
gi|5453559 ATP synthase, H+ transporting, mitochondrial F0 compl...    28   1.2  
gi|13775238 plasmalemma vesicle associated protein [Homo sapiens]      28   2.0  
gi|10835133 Fc fragment of IgG, high affinity Ia, receptor (CD64...    27   4.5  
gi|63055063 Fc fragment of IgG, high affinity Ib, receptor (CD64...    27   4.5  
gi|14249704 RAS-like, estrogen-regulated, growth inhibitor [Homo...    26   5.9  

>gi|239753482 PREDICTED: similar to HSPC300 [Homo sapiens]
          Length = 85

 Score =  172 bits (436), Expect = 5e-44
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MAGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR 60
          MAGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR
Sbjct: 1  MAGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR 60

Query: 61 IEYIEARVSLMGKGIPERMHISTYC 85
          IEYIEARVSLMGKGIPERMHISTYC
Sbjct: 61 IEYIEARVSLMGKGIPERMHISTYC 85


>gi|27544939 chromosome 3 open reading frame 10 [Homo sapiens]
          Length = 75

 Score =  137 bits (344), Expect = 2e-33
 Identities = 68/69 (98%), Positives = 69/69 (100%)

Query: 1  MAGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR 60
          MAGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR
Sbjct: 1  MAGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERR 60

Query: 61 IEYIEARVS 69
          IEYIEARV+
Sbjct: 61 IEYIEARVT 69


>gi|171906559 peripheral benzodiazepine receptor-associated protein
           1 isoform a [Homo sapiens]
          Length = 1857

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 12/40 (30%), Positives = 26/40 (65%)

Query: 45  SRLATLNEKLTALERRIEYIEARVSLMGKGIPERMHISTY 84
           S L   ++++ AL+R    ++AR++L+GK  P+ +H+  +
Sbjct: 222 SALLAKDKQIAALQRECRELQARLTLVGKEGPQWLHVRDF 261


>gi|51479152 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit d isoform b [Homo sapiens]
          Length = 137

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 15 DWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVSLMG 72
          DW    + EII  + K IA  L S++ +  SRLA L E   A++    Y +A V+  G
Sbjct: 12 DWV--AFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAID--WAYYKANVAKAG 65


>gi|5453559 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit d isoform a [Homo sapiens]
          Length = 161

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 15 DWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVSLMG 72
          DW    + EII  + K IA  L S++ +  SRLA L E   A++    Y +A V+  G
Sbjct: 12 DWV--AFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAID--WAYYKANVAKAG 65


>gi|13775238 plasmalemma vesicle associated protein [Homo sapiens]
          Length = 442

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 18  NREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61
           N+ Y+  I  S K+  D     + SC + L  LN+K+  LE  I
Sbjct: 129 NQRYMAAIILSEKQCRDQFKDMNKSCDALLFMLNQKVKTLEVEI 172


>gi|10835133 Fc fragment of IgG, high affinity Ia, receptor (CD64)
           [Homo sapiens]
          Length = 374

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 1   MAGQEDPVQREIHQDW 16
           ++G+ DP+Q EIH+ W
Sbjct: 89  LSGRSDPIQLEIHRGW 104


>gi|63055063 Fc fragment of IgG, high affinity Ib, receptor (CD64)
           isoform a [Homo sapiens]
          Length = 280

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 1   MAGQEDPVQREIHQDW 16
           ++G+ DP+Q EIH+ W
Sbjct: 89  LSGRSDPIQLEIHRGW 104


>gi|14249704 RAS-like, estrogen-regulated, growth inhibitor [Homo
          sapiens]
          Length = 199

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 2  AGQEDPVQREIHQDW 16
          AGQED +QRE H  W
Sbjct: 62 AGQEDTIQREGHMRW 76


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,781,621
Number of Sequences: 37866
Number of extensions: 80527
Number of successful extensions: 362
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 9
length of query: 85
length of database: 18,247,518
effective HSP length: 57
effective length of query: 28
effective length of database: 16,089,156
effective search space: 450496368
effective search space used: 450496368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.