Search of human proteins with 239753444

Search of human proteins with 239753444

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753444 PREDICTED: similar to heat shock 10kDa protein 1
[Homo sapiens]
         (175 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753444 PREDICTED: similar to heat shock 10kDa protein 1 [H...   352   9e-98
gi|239741907 PREDICTED: hypothetical protein XP_002342349 [Homo ...   352   9e-98
gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo ...   197   3e-51
gi|4504523 heat shock 10kDa protein 1 [Homo sapiens]                  165   2e-41
gi|169210012 PREDICTED: similar to heat shock 10 kDa protein 1 [...   156   8e-39
gi|239752758 PREDICTED: similar to heat shock 10kDa protein 1 [H...   144   4e-35
gi|124430557 a disintegrin-like and metalloprotease with thrombo...    28   3.1  
gi|83776598 virus-induced signaling adapter [Homo sapiens]             27   6.9  
gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens]                27   9.0  

>gi|239753444 PREDICTED: similar to heat shock 10kDa protein 1 [Homo
           sapiens]
          Length = 175

 Score =  352 bits (903), Expect = 9e-98
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
           MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI
Sbjct: 1   MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60

Query: 61  QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGHCLLWGYGKWQQSTLGSEISH 120
           QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGHCLLWGYGKWQQSTLGSEISH
Sbjct: 61  QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGHCLLWGYGKWQQSTLGSEISH 120

Query: 121 GTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSVQLAKFPAEDSLSDG 175
           GTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSVQLAKFPAEDSLSDG
Sbjct: 121 GTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSVQLAKFPAEDSLSDG 175


>gi|239741907 PREDICTED: hypothetical protein XP_002342349 [Homo
           sapiens]
          Length = 175

 Score =  352 bits (903), Expect = 9e-98
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
           MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI
Sbjct: 1   MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60

Query: 61  QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGHCLLWGYGKWQQSTLGSEISH 120
           QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGHCLLWGYGKWQQSTLGSEISH
Sbjct: 61  QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGHCLLWGYGKWQQSTLGSEISH 120

Query: 121 GTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSVQLAKFPAEDSLSDG 175
           GTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSVQLAKFPAEDSLSDG
Sbjct: 121 GTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSVQLAKFPAEDSLSDG 175


>gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo
           sapiens]
          Length = 244

 Score =  197 bits (502), Expect = 3e-51
 Identities = 102/119 (85%), Positives = 107/119 (89%), Gaps = 1/119 (0%)

Query: 1   MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
           MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI
Sbjct: 1   MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60

Query: 61  QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGHCLLWGYGKWQQSTLGSEIS 119
           QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTG C+     + Q+     ++S
Sbjct: 61  QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTG-CVYLKNNRAQEEAAAKDLS 118



 Score =  154 bits (388), Expect = 5e-38
 Identities = 74/74 (100%), Positives = 74/74 (100%)

Query: 102 LLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSV 161
           LLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSV
Sbjct: 171 LLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSV 230

Query: 162 QLAKFPAEDSLSDG 175
           QLAKFPAEDSLSDG
Sbjct: 231 QLAKFPAEDSLSDG 244


>gi|4504523 heat shock 10kDa protein 1 [Homo sapiens]
          Length = 102

 Score =  165 bits (418), Expect = 2e-41
 Identities = 85/97 (87%), Positives = 88/97 (90%)

Query: 1  MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
          MAGQAFRKFL LFDRV VER A  TVTKGGIMLPEKSQGKVLQA  VAVGSGSKGKGGEI
Sbjct: 1  MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI 60

Query: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDIL 97
          QPVS++VGDK LL EYGGT+VVLDDKDYFLFRDGDIL
Sbjct: 61 QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDIL 97


>gi|169210012 PREDICTED: similar to heat shock 10 kDa protein 1
          [Homo sapiens]
          Length = 103

 Score =  156 bits (395), Expect = 8e-39
 Identities = 82/98 (83%), Positives = 88/98 (89%), Gaps = 1/98 (1%)

Query: 1  MAGQAFRK-FLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGE 59
          MAGQAFRK FL LF+RV VER A  TVT+GGIMLPEKSQGKVLQA  VAVGSGSKGKGGE
Sbjct: 1  MAGQAFRKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGE 60

Query: 60 IQPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDIL 97
          IQPVSM+VGDK LL E+GGT+V+LDDKDYFLFRDGDIL
Sbjct: 61 IQPVSMKVGDKVLLPEHGGTKVILDDKDYFLFRDGDIL 98


>gi|239752758 PREDICTED: similar to heat shock 10kDa protein 1 [Homo
           sapiens]
          Length = 102

 Score =  144 bits (363), Expect = 4e-35
 Identities = 76/100 (76%), Positives = 80/100 (80%)

Query: 1   MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60
           MAGQ FRKFL L  +   ER    TVTKGGIMLPEKSQGKV QA  VAVGSGSKGKGGE 
Sbjct: 1   MAGQTFRKFLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGEG 60

Query: 61  QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGH 100
           QPVS +VGDK LL +YGGT+VVLDDKDYFLFRDGDIL  H
Sbjct: 61  QPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDILGKH 100


>gi|124430557 a disintegrin-like and metalloprotease with
            thrombospondin type 1 motifs 20 [Homo sapiens]
          Length = 1910

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 100  HCLLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSATLP 144
            H   W  GKW + ++   I    R ++ +TK  LSS   L+   P
Sbjct: 1654 HLATWKVGKWSKCSVTCGIGIMKRQVKCITKHGLSSDLCLNHLKP 1698


>gi|83776598 virus-induced signaling adapter [Homo sapiens]
          Length = 540

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 112 STLGSEISHGTRHLRALTKFNLSSPAPLSATLPPTALKMEMYPTFKPLSVQLAKFPAEDS 171
           ST+ S++   ++   A+    L++PAP  + LP  + +  M P+  P S+ L K  A   
Sbjct: 320 STVPSKLPTSSKPPGAVPSNALTNPAP--SKLPINSTRAGMVPSKVPTSMVLTKVSASTV 377

Query: 172 LSDG 175
            +DG
Sbjct: 378 PTDG 381


>gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens]
          Length = 739

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 44  AKGVAVGSGSKGKGGEIQPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGH--- 100
           A  V       G+G    PV  ++G K  LL+  G+   L  K       G + +G    
Sbjct: 287 AVNVPAAGSHLGQGKRAIPVPNKLGLKKTLLKAPGSTSNLARKS----SSGPVWSGASSA 342

Query: 101 CLLWGYGKWQQSTLGSEISHGTRHLRALTKFNLSSPAPLSATLP 144
           C     GK + S   S  ++ +R L  ++K     PA L   LP
Sbjct: 343 CTSPAVGKAKSSEFASIPANSSRPLSNISKSGRMGPAMLRPALP 386


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,746,990
Number of Sequences: 37866
Number of extensions: 303723
Number of successful extensions: 782
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 11
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.