Search of human proteins with 239752549

Search of human proteins with 239752549

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752549 PREDICTED: hypothetical protein [Homo sapiens]
         (414 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752549 PREDICTED: hypothetical protein [Homo sapiens]           830   0.0  
gi|4885409 high density lipoprotein binding protein [Homo sapiens]     30   4.0  
gi|42716280 high density lipoprotein binding protein [Homo sapiens]    30   4.0  
gi|169636435 caudal type homeobox 2 [Homo sapiens]                     30   5.2  
gi|7662230 ring finger protein 40 [Homo sapiens]                       30   5.2  
gi|239753600 PREDICTED: hypothetical protein [Homo sapiens]            29   9.0  

>gi|239752549 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score =  830 bits (2143), Expect = 0.0
 Identities = 414/414 (100%), Positives = 414/414 (100%)

Query: 1   MRCAGPESTRAPASEPSVKEMSIGERFFEALFSFAEGDYVATRRFLFQNCTLEAVRANKS 60
           MRCAGPESTRAPASEPSVKEMSIGERFFEALFSFAEGDYVATRRFLFQNCTLEAVRANKS
Sbjct: 1   MRCAGPESTRAPASEPSVKEMSIGERFFEALFSFAEGDYVATRRFLFQNCTLEAVRANKS 60

Query: 61  SGHNRVASQFNLLEFSSSEISPEHGVRHYAHYPTQGPACASAWMAGTVYRNYLLHPDFFG 120
           SGHNRVASQFNLLEFSSSEISPEHGVRHYAHYPTQGPACASAWMAGTVYRNYLLHPDFFG
Sbjct: 61  SGHNRVASQFNLLEFSSSEISPEHGVRHYAHYPTQGPACASAWMAGTVYRNYLLHPDFFG 120

Query: 121 GTHAAPFMENADVADRGQRTNRQLNMLDDLVEYLTRARNSGDATSAADAANSTACSAPAL 180
           GTHAAPFMENADVADRGQRTNRQLNMLDDLVEYLTRARNSGDATSAADAANSTACSAPAL
Sbjct: 121 GTHAAPFMENADVADRGQRTNRQLNMLDDLVEYLTRARNSGDATSAADAANSTACSAPAL 180

Query: 181 LREHFFTICNGYFVQKRQMASLPARLYRIAAVEGISMADVEEESVSRLHIGLVEVATVTL 240
           LREHFFTICNGYFVQKRQMASLPARLYRIAAVEGISMADVEEESVSRLHIGLVEVATVTL
Sbjct: 181 LREHFFTICNGYFVQKRQMASLPARLYRIAAVEGISMADVEEESVSRLHIGLVEVATVTL 240

Query: 241 LLHDPPVSRVREQRQLTDQAERKVVRRSDVDVAAEVEVHEVTQTYNSALSLPPKDYCTPL 300
           LLHDPPVSRVREQRQLTDQAERKVVRRSDVDVAAEVEVHEVTQTYNSALSLPPKDYCTPL
Sbjct: 241 LLHDPPVSRVREQRQLTDQAERKVVRRSDVDVAAEVEVHEVTQTYNSALSLPPKDYCTPL 300

Query: 301 EWSGIATLSRIILRGTYEATLLAGVQHTLRDLERQASLADASSPATPPFSLPPIFLANVG 360
           EWSGIATLSRIILRGTYEATLLAGVQHTLRDLERQASLADASSPATPPFSLPPIFLANVG
Sbjct: 301 EWSGIATLSRIILRGTYEATLLAGVQHTLRDLERQASLADASSPATPPFSLPPIFLANVG 360

Query: 361 GGVFNNDKEWIASGIASAVHRVAALSVPLNVRLVHFCQMDEYYMKYFPSWPVLD 414
           GGVFNNDKEWIASGIASAVHRVAALSVPLNVRLVHFCQMDEYYMKYFPSWPVLD
Sbjct: 361 GGVFNNDKEWIASGIASAVHRVAALSVPLNVRLVHFCQMDEYYMKYFPSWPVLD 414


>gi|4885409 high density lipoprotein binding protein [Homo sapiens]
          Length = 1268

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 201 SLPARLYR-IAAVEGISMADVEEESVS-RLHIGLVEVATVTLLLHDPPVSRVREQRQLTD 258
           S+PA+L+  +   +G  +  + EE     +H  +    + T+++  P     + ++QL  
Sbjct: 659 SIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLH 718

Query: 259 QAERKVVRRSDVDVAAEVEVHE 280
            AE K  +   VD+ A+ E H+
Sbjct: 719 LAEEKQTKSFTVDIRAKPEYHK 740


>gi|42716280 high density lipoprotein binding protein [Homo sapiens]
          Length = 1268

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 201 SLPARLYR-IAAVEGISMADVEEESVS-RLHIGLVEVATVTLLLHDPPVSRVREQRQLTD 258
           S+PA+L+  +   +G  +  + EE     +H  +    + T+++  P     + ++QL  
Sbjct: 659 SIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLH 718

Query: 259 QAERKVVRRSDVDVAAEVEVHE 280
            AE K  +   VD+ A+ E H+
Sbjct: 719 LAEEKQTKSFTVDIRAKPEYHK 740


>gi|169636435 caudal type homeobox 2 [Homo sapiens]
          Length = 313

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 76  SSSEISPEHGVRHYAHYPTQGPACAS 101
           S ++  P H   H+ H+P   P+CAS
Sbjct: 109 SPADYHPHHHPHHHPHHPAAAPSCAS 134


>gi|7662230 ring finger protein 40 [Homo sapiens]
          Length = 1001

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 24/203 (11%)

Query: 141 NRQLNMLDDLVEYLTRARNS-GDATSAADAANS---TACSAPALLREHFFTICNGYFVQK 196
           NR    LD+ VE L R   S G+ +SA +A  +     C    L       + +   +Q 
Sbjct: 95  NRYWAQLDETVEALLRCHESQGELSSAPEAPGTQEGPTCDGTPLPEPGTSELRDPLLMQL 154

Query: 197 RQMASLPARLYRIAAVEGISMADVEEESVSRLHIGLVEVATVTLLLHDPPVSRVREQRQL 256
           R   S PA  + + A+   S  +VE E   R+      V+ V         +  R QR++
Sbjct: 155 RPPLSEPALAF-VVALGASSSEEVELELQGRMEFSKAAVSRVV-------EASDRLQRRV 206

Query: 257 TDQAERKVVRRSDVDVAAEVEVH------EVTQTYNSALSLPPKDYCTPLEWSGIATLSR 310
            +  +R   R     ++   + H      E  +  + A  L  K +   LE+S +     
Sbjct: 207 EELCQRVYSRGDSEPLSEAAQAHTRELGRENRRLQDLATQLQEKHHRISLEYSELQD--- 263

Query: 311 IILRGTYEATLLAGVQHTLRDLE 333
              + T   T +  ++ T+ DL+
Sbjct: 264 ---KVTSAETKVLEMETTVEDLQ 283


>gi|239753600 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 258

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 194 VQKRQMASLPARLYRIAAVEGISMADVEEESVSRLHIGLV---EVATVTLLLH----DPP 246
           V  R + ++PA   R+A V  + +    ++ ++   +      EVA + +L      D P
Sbjct: 117 VAARALLAVPAHWPRVARVAHVRLHVAPQQHLAATRVATARGREVAALEVLRQLLQLDHP 176

Query: 247 VSRVREQRQLTDQAERKVVRRSDV 270
            +  R  R L  Q E K + R DV
Sbjct: 177 AAAARRVRALDVQLEDKALERQDV 200


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,385,826
Number of Sequences: 37866
Number of extensions: 615265
Number of successful extensions: 1465
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1463
Number of HSP's gapped (non-prelim): 6
length of query: 414
length of database: 18,247,518
effective HSP length: 105
effective length of query: 309
effective length of database: 14,271,588
effective search space: 4409920692
effective search space used: 4409920692
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.