Search of human proteins with 239752160

Search of human proteins with 239752160

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752160 PREDICTED: hypothetical protein [Homo sapiens]
         (44 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752160 PREDICTED: hypothetical protein [Homo sapiens]           100   2e-22
gi|187281580 meckelin isoform 1 [Homo sapiens]                         30   0.32 
gi|153792086 FtsJ methyltransferase domain containing 1 [Homo sa...    30   0.42 
gi|153791865 FtsJ methyltransferase domain containing 1 [Homo sa...    30   0.42 
gi|54873613 agrin [Homo sapiens]                                       26   6.0  
gi|38788416 laminin, alpha 1 precursor [Homo sapiens]                  26   6.0  

>gi|239752160 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 44

 Score =  100 bits (250), Expect = 2e-22
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MVASDTTTGQCRCRLWHCGVGGLLLSKDCCEFCEGERLLSRNMR 44
          MVASDTTTGQCRCRLWHCGVGGLLLSKDCCEFCEGERLLSRNMR
Sbjct: 1  MVASDTTTGQCRCRLWHCGVGGLLLSKDCCEFCEGERLLSRNMR 44


>gi|187281580 meckelin isoform 1 [Homo sapiens]
          Length = 995

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 6   TTTGQCRCRLWHC----GVGGLLLSKDCCEFCEG 35
           T  G+C C + H      + G LLS+  CE C+G
Sbjct: 122 TAEGKCHCPIGHILVERDINGTLLSQATCELCDG 155


>gi|153792086 FtsJ methyltransferase domain containing 1 [Homo
           sapiens]
          Length = 770

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 14/36 (38%), Positives = 15/36 (41%)

Query: 7   TTGQCRCRLWHCGVGGLLLSKDCCEFCEGERLLSRN 42
           T     C LWH   G  L    C  FC GE L + N
Sbjct: 485 TASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLN 520


>gi|153791865 FtsJ methyltransferase domain containing 1 [Homo
           sapiens]
          Length = 770

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 14/36 (38%), Positives = 15/36 (41%)

Query: 7   TTGQCRCRLWHCGVGGLLLSKDCCEFCEGERLLSRN 42
           T     C LWH   G  L    C  FC GE L + N
Sbjct: 485 TASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLN 520


>gi|54873613 agrin [Homo sapiens]
          Length = 2045

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 8/30 (26%)

Query: 5   DTTTGQCRCRLWHCGVGGLLLSKDCCEFCE 34
           D  TGQC CR    GVGGL      C+ CE
Sbjct: 806 DPATGQCSCR---PGVGGLR-----CDRCE 827


>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
          Length = 3075

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 8/35 (22%)

Query: 5    DTTTGQCRCRLWHCGVGGLLLSKDCCEFCEGERLL 39
            D T+GQC CRL   G  GL      C+ CE   +L
Sbjct: 1522 DRTSGQCVCRL---GASGLR-----CDECEPRHIL 1548


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.140    0.502 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,739,505
Number of Sequences: 37866
Number of extensions: 49184
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 6
length of query: 44
length of database: 18,247,518
effective HSP length: 18
effective length of query: 26
effective length of database: 17,565,930
effective search space: 456714180
effective search space used: 456714180
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.