Search of human proteins with 118421083

Search of human proteins with 118421083

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|118421083 hypothetical protein LOC780776 [Homo sapiens]
         (213 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|118421083 hypothetical protein LOC780776 [Homo sapiens]            437   e-123
gi|148747574 hypothetical protein LOC51030 [Homo sapiens]             238   3e-63
gi|205277364 hypothetical protein LOC201158 isoform 2 [Homo sapi...   231   3e-61
gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo sapi...   199   1e-51
gi|24797086 importin 5 [Homo sapiens]                                  28   5.8  
gi|23943900 transmembrane channel-like 8 [Homo sapiens]                28   5.8  
gi|37537552 sodium-dependent organic anion transporter [Homo sap...    28   7.6  
gi|94966752 elongation factor Tu GTP binding domain containing 1...    27   9.9  
gi|94966754 elongation factor Tu GTP binding domain containing 1...    27   9.9  
gi|4507541 transmembrane 4 superfamily member 6 [Homo sapiens]         27   9.9  

>gi|118421083 hypothetical protein LOC780776 [Homo sapiens]
          Length = 213

 Score =  437 bits (1124), Expect = e-123
 Identities = 213/213 (100%), Positives = 213/213 (100%)

Query: 1   MKQALVDDTEDVSLDFGNEEELAFRKAKIRHPLATFFHLFFRVSAIVTYVSCDWFSKSFV 60
           MKQALVDDTEDVSLDFGNEEELAFRKAKIRHPLATFFHLFFRVSAIVTYVSCDWFSKSFV
Sbjct: 1   MKQALVDDTEDVSLDFGNEEELAFRKAKIRHPLATFFHLFFRVSAIVTYVSCDWFSKSFV 60

Query: 61  GCFVMVLLLLSLDFWSVKNVTGRLLVGLRWWNQIDEDGKSHWIFEARKVSPNSIAATEAE 120
           GCFVMVLLLLSLDFWSVKNVTGRLLVGLRWWNQIDEDGKSHWIFEARKVSPNSIAATEAE
Sbjct: 61  GCFVMVLLLLSLDFWSVKNVTGRLLVGLRWWNQIDEDGKSHWIFEARKVSPNSIAATEAE 120

Query: 121 ARIFWLGLIICPMIWIVFFFSTLFSLKLKWLALVVAGISLQAANLYGYILCKMGGNSDIG 180
           ARIFWLGLIICPMIWIVFFFSTLFSLKLKWLALVVAGISLQAANLYGYILCKMGGNSDIG
Sbjct: 121 ARIFWLGLIICPMIWIVFFFSTLFSLKLKWLALVVAGISLQAANLYGYILCKMGGNSDIG 180

Query: 181 KVTASFLSQTVFQTACPGDFQKPGLEGLEIHQH 213
           KVTASFLSQTVFQTACPGDFQKPGLEGLEIHQH
Sbjct: 181 KVTASFLSQTVFQTACPGDFQKPGLEGLEIHQH 213


>gi|148747574 hypothetical protein LOC51030 [Homo sapiens]
          Length = 205

 Score =  238 bits (607), Expect = 3e-63
 Identities = 114/192 (59%), Positives = 144/192 (75%), Gaps = 4/192 (2%)

Query: 1   MKQALVDDTEDVSLDFGNEEELAFR--KAKIRHPLATFFHLFFRVSAIVTYVSCDWFSKS 58
           ++Q   DDTEDVSL F  EEE   R  KAKIRHP+A+FFHLFFRVSAI+ Y+ C   S S
Sbjct: 2   LQQDSNDDTEDVSL-FDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVYLLCGLLSSS 60

Query: 59  FVGCFVMVLLLLSLDFWSVKNVTGRLLVGLRWWNQIDEDGKSHWIFEARK-VSPNSIAAT 117
           F+ C V ++LLLS DFW+VKNVTGRL+VGLRWWN IDEDGKSHW+FE+RK  S  +   +
Sbjct: 61  FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120

Query: 118 EAEARIFWLGLIICPMIWIVFFFSTLFSLKLKWLALVVAGISLQAANLYGYILCKMGGNS 177
           EAE+RIFWLGLI CP++W++F FS LFS ++KWLA+V+ G+ LQ ANLYGYI CK+    
Sbjct: 121 EAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRK 180

Query: 178 DIGKVTASFLSQ 189
            +  +  S+  +
Sbjct: 181 HLTSMATSYFGK 192


>gi|205277364 hypothetical protein LOC201158 isoform 2 [Homo
           sapiens]
          Length = 203

 Score =  231 bits (590), Expect = 3e-61
 Identities = 112/192 (58%), Positives = 142/192 (73%), Gaps = 4/192 (2%)

Query: 1   MKQALVDDTEDVSLDFGNEEELAFR--KAKIRHPLATFFHLFFRVSAIVTYVSCDWFSKS 58
           ++Q   DDTEDVSL F  EEE   R  KAKIRHP+A+FFHLFFRVSAI+  + C+  S S
Sbjct: 2   LQQDSNDDTEDVSL-FDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS 60

Query: 59  FVGCFVMVLLLLSLDFWSVKNVTGRLLVGLRWWNQIDEDGKSHWIFEARK-VSPNSIAAT 117
           F+ C V ++LLLS DFW+VKNVTGRL+VGLRWWN IDEDGKSHW+FE+RK  S  +   +
Sbjct: 61  FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120

Query: 118 EAEARIFWLGLIICPMIWIVFFFSTLFSLKLKWLALVVAGISLQAANLYGYILCKMGGNS 177
           EAE+RIFWLGLI C ++W++F FS LFS  +KWLA+V+ G+ LQ ANLYGYI CK+    
Sbjct: 121 EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQGANLYGYIRCKVRSRK 180

Query: 178 DIGKVTASFLSQ 189
            +  +  S+  +
Sbjct: 181 HLTSMATSYFGK 192


>gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo
           sapiens]
          Length = 276

 Score =  199 bits (506), Expect = 1e-51
 Identities = 97/154 (62%), Positives = 119/154 (77%), Gaps = 4/154 (2%)

Query: 1   MKQALVDDTEDVSLDFGNEEELAFR--KAKIRHPLATFFHLFFRVSAIVTYVSCDWFSKS 58
           ++Q   DDTEDVSL F  EEE   R  KAKIRHP+A+FFHLFFRVSAI+  + C+  S S
Sbjct: 2   LQQDSNDDTEDVSL-FDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS 60

Query: 59  FVGCFVMVLLLLSLDFWSVKNVTGRLLVGLRWWNQIDEDGKSHWIFEARK-VSPNSIAAT 117
           F+ C V ++LLLS DFW+VKNVTGRL+VGLRWWN IDEDGKSHW+FE+RK  S  +   +
Sbjct: 61  FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120

Query: 118 EAEARIFWLGLIICPMIWIVFFFSTLFSLKLKWL 151
           EAE+RIFWLGLI C ++W++F FS LFS  +KWL
Sbjct: 121 EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWL 154


>gi|24797086 importin 5 [Homo sapiens]
          Length = 1115

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 92  NQIDEDGKSHW----IFEARKVSPNSIAATEAEARIFW 125
           N IDEDG + W     F    VS  ++   EA   IFW
Sbjct: 137 NLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHIFW 174


>gi|23943900 transmembrane channel-like 8 [Homo sapiens]
          Length = 726

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 15/85 (17%)

Query: 69  LLSLDFWSVKNVTGRLLVGL---RWWNQIDEDGKSHWIFEARKVSPNSIAATEAEARIFW 125
           LL++ F  +  +  RLLV     R+W          W+     + P ++    A   + W
Sbjct: 436 LLTVAFAFLVTLPRRLLVDRFSGRFWA---------WLEREEFLVPKNVLDIVAGQTVTW 486

Query: 126 LGLIICPMIWI---VFFFSTLFSLK 147
           +GL  CP++ +   VF F T +  K
Sbjct: 487 MGLFYCPLLPLLNSVFLFLTFYIKK 511


>gi|37537552 sodium-dependent organic anion transporter [Homo
           sapiens]
          Length = 377

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 151 LALVVAGISLQAANLYGYILCKMGGNSDIGKVTASFL 187
           +  VV G+ L    + G +L K   NSDI  +T SF+
Sbjct: 196 IGAVVGGVLLLVVAVAGVVLAKGSWNSDITLLTISFI 232


>gi|94966752 elongation factor Tu GTP binding domain containing 1
           isoform 2 [Homo sapiens]
          Length = 1069

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 75  WSVKNVTGRLLVGLRWWNQIDEDGKSHWIFEARKVSPN 112
           W  K    + L G RW N +D+     W F  RK  PN
Sbjct: 750 WEFKGKLEQHLTGRRWRNIVDQ----IWSFGPRKCGPN 783


>gi|94966754 elongation factor Tu GTP binding domain containing 1
           isoform 1 [Homo sapiens]
          Length = 1120

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 75  WSVKNVTGRLLVGLRWWNQIDEDGKSHWIFEARKVSPN 112
           W  K    + L G RW N +D+     W F  RK  PN
Sbjct: 801 WEFKGKLEQHLTGRRWRNIVDQ----IWSFGPRKCGPN 834


>gi|4507541 transmembrane 4 superfamily member 6 [Homo sapiens]
          Length = 245

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 56 SKSFVGCFVMVLLLLSLDFWSVKNVTGRLLVGLRWWNQI 94
          +K  + CF  VLL+ +  FW    +TG +L+ +  W ++
Sbjct: 10 TKPVITCFKSVLLIYTFIFW----ITGVILLAVGIWGKV 44


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.140    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,422,696
Number of Sequences: 37866
Number of extensions: 275428
Number of successful extensions: 732
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 10
length of query: 213
length of database: 18,247,518
effective HSP length: 98
effective length of query: 115
effective length of database: 14,536,650
effective search space: 1671714750
effective search space used: 1671714750
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.