Search of human proteins with 239750788

Search of human proteins with 239750788

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750788 PREDICTED: similar to hCG2040392 [Homo sapiens]
         (185 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750788 PREDICTED: similar to hCG2040392 [Homo sapiens]          372   e-103
gi|21359945 chromosome condensation protein G [Homo sapiens]          301   2e-82
gi|221219000 phospholipase C-like 2 isoform 1 [Homo sapiens]           30   0.91 
gi|163644311 phospholipase C-like 2 isoform 2 [Homo sapiens]           30   0.91 
gi|19923949 kinesin family member 12 [Homo sapiens]                    28   4.5  
gi|115298659 spectrin, alpha, erythrocytic 1 [Homo sapiens]            28   5.9  
gi|22027480 pogo transposable element with KRAB domain [Homo sap...    27   7.7  

>gi|239750788 PREDICTED: similar to hCG2040392 [Homo sapiens]
          Length = 185

 Score =  372 bits (954), Expect = e-103
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MIDLNPELRQAVLSCIAPSAKTLPKIVGCTKDVKEAVRKLAYPVLAEKVRMRAMSIAQTV 60
           MIDLNPELRQAVLSCIAPSAKTLPKIVGCTKDVKEAVRKLAYPVLAEKVRMRAMSIAQTV
Sbjct: 1   MIDLNPELRQAVLSCIAPSAKTLPKIVGCTKDVKEAVRKLAYPVLAEKVRMRAMSIAQTV 60

Query: 61  MLPQQGFNERSDAVKQAMWKHLLQSWLWFSEGNIFEWLQQLDVENSEVAVSVLNAMFSMT 120
           MLPQQGFNERSDAVKQAMWKHLLQSWLWFSEGNIFEWLQQLDVENSEVAVSVLNAMFSMT
Sbjct: 61  MLPQQGFNERSDAVKQAMWKHLLQSWLWFSEGNIFEWLQQLDVENSEVAVSVLNAMFSMT 120

Query: 121 PLSELVAICKNNDGRKLILVETLTPEIALYWCALCEYLKSKGDEGEEFLERISPEPVVYI 180
           PLSELVAICKNNDGRKLILVETLTPEIALYWCALCEYLKSKGDEGEEFLERISPEPVVYI
Sbjct: 121 PLSELVAICKNNDGRKLILVETLTPEIALYWCALCEYLKSKGDEGEEFLERISPEPVVYI 180

Query: 181 DYLLR 185
           DYLLR
Sbjct: 181 DYLLR 185


>gi|21359945 chromosome condensation protein G [Homo sapiens]
          Length = 1015

 Score =  301 bits (771), Expect = 2e-82
 Identities = 157/183 (85%), Positives = 165/183 (90%), Gaps = 1/183 (0%)

Query: 3   DLNPELRQAVLSCIAPSAKTLPKIVGCTKDVKEAVRKLAYPVLAEKVRMRAMSIAQTVML 62
           D NPE+R+AVLSCIAPSAKTLPKIVG TKDVKEAVRKLAY VLAEKV MRAMSIAQ VML
Sbjct: 190 DSNPEVRRAVLSCIAPSAKTLPKIVGRTKDVKEAVRKLAYQVLAEKVHMRAMSIAQRVML 249

Query: 63  PQQGFNERSDAVKQAMWKHLLQSWLWFSEGNIFEWLQQLDVEN-SEVAVSVLNAMFSMTP 121
            QQG N+RSDAVKQAM KHLLQ WL FSEGNI E L +LDVEN SEVAVSVLNA+FS+TP
Sbjct: 250 LQQGLNDRSDAVKQAMQKHLLQGWLRFSEGNILELLHRLDVENSSEVAVSVLNALFSITP 309

Query: 122 LSELVAICKNNDGRKLILVETLTPEIALYWCALCEYLKSKGDEGEEFLERISPEPVVYID 181
           LSELV +CKNNDGRKLI VETLTPEIALYWCALCEYLKSKGDEGEEFLE+I PEPVVY D
Sbjct: 310 LSELVGLCKNNDGRKLIPVETLTPEIALYWCALCEYLKSKGDEGEEFLEQILPEPVVYAD 369

Query: 182 YLL 184
           YLL
Sbjct: 370 YLL 372


>gi|221219000 phospholipase C-like 2 isoform 1 [Homo sapiens]
          Length = 1127

 Score = 30.4 bits (67), Expect = 0.91
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 16/94 (17%)

Query: 96  EWLQQLDVENSEVAVSVLNAMFSMTP-LSELVAICKNNDGRKLILVETLTPEIALYW--C 152
           E  Q++  EN E   +V    F +   LSELV+ICK+   ++      ++ ++  YW  C
Sbjct: 591 EMSQRMGKENMEQPNNVPVKRFQLCKELSELVSICKSVQFKEF----QVSFQVQKYWEVC 646

Query: 153 ALCEYLKSK------GD---EGEEFLERISPEPV 177
           +  E L SK      GD     + FL R+ P P+
Sbjct: 647 SFNEVLASKYANENPGDFVNYNKRFLARVFPSPM 680


>gi|163644311 phospholipase C-like 2 isoform 2 [Homo sapiens]
          Length = 1001

 Score = 30.4 bits (67), Expect = 0.91
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 16/94 (17%)

Query: 96  EWLQQLDVENSEVAVSVLNAMFSMTP-LSELVAICKNNDGRKLILVETLTPEIALYW--C 152
           E  Q++  EN E   +V    F +   LSELV+ICK+   ++      ++ ++  YW  C
Sbjct: 465 EMSQRMGKENMEQPNNVPVKRFQLCKELSELVSICKSVQFKEF----QVSFQVQKYWEVC 520

Query: 153 ALCEYLKSK------GD---EGEEFLERISPEPV 177
           +  E L SK      GD     + FL R+ P P+
Sbjct: 521 SFNEVLASKYANENPGDFVNYNKRFLARVFPSPM 554


>gi|19923949 kinesin family member 12 [Homo sapiens]
          Length = 513

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 12  VLSCIAPSAKTLPKIVGCTKDVKEAVRKLAYPVLAEKVRMRAMSIAQTVMLPQQGFNERS 71
           +++C++PSA+ LP+ +   +    A R    P   +    +     +T ML  Q  N R 
Sbjct: 200 MVACVSPSAQCLPETLSTLRYASRAQRVTTRPQAPKSPVAKQPQRLETEMLQLQEENRRL 259

Query: 72  DAVKQAM---WKHLLQSWLWFSEGNIFEWLQQLDVENSEV 108
                 M      L  + + +++ N++  LQ+  +EN  +
Sbjct: 260 QFQLDQMDCKASGLSGARVAWAQRNLYGMLQEFMLENERL 299


>gi|115298659 spectrin, alpha, erythrocytic 1 [Homo sapiens]
          Length = 2419

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 37   VRKLA---YPVLAEKVRMRAMSIAQTVMLPQQGFNERSDAVKQAMWKHLLQSW----LWF 89
            VR+LA   +P+L ++ R    +I Q     +  +    D  ++   + LLQ +    L +
Sbjct: 1031 VRRLAHDEFPMLPQRRREEPGNITQRQEQIENQYRSLLDRAEERR-RRLLQRYNEFLLAY 1089

Query: 90   SEGNIFEWLQQLDVENSEV 108
              G++ EW+Q+   EN+ V
Sbjct: 1090 EAGDMLEWIQEKKAENTGV 1108


>gi|22027480 pogo transposable element with KRAB domain [Homo
           sapiens]
          Length = 609

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)

Query: 43  PVLAEKVRMRAMSIAQTVMLPQQGF 67
           P+  E ++++A+ IAQ + +P++GF
Sbjct: 279 PITREAMQLKALEIAQEMNIPEKGF 303


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,813,093
Number of Sequences: 37866
Number of extensions: 254211
Number of successful extensions: 528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 8
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.