Search of human proteins with 239749944

Search of human proteins with 239749944

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749944 PREDICTED: similar to Parkinson disease 7 domain
containing 1 isoform 1 [Homo sapiens]
         (183 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749944 PREDICTED: similar to Parkinson disease 7 domain co...   370   e-103
gi|239749942 PREDICTED: similar to Parkinson disease 7 domain co...   350   4e-97
gi|32699045 Parkinson disease 7 domain containing 1 [Homo sapiens]    350   4e-97
gi|112807234 G protein-coupled receptor, family C, group 6, memb...    28   3.4  
gi|8923009 non-SMC element 4 homolog A [Homo sapiens]                  28   3.4  
gi|54112394 calcium channel, voltage-dependent, alpha 2/delta su...    28   5.7  
gi|54112392 calcium channel, voltage-dependent, alpha 2/delta su...    28   5.7  
gi|45597177 TBC1 domain family, member 9B (with GRAM domain) iso...    28   5.7  
gi|45597175 TBC1 domain family, member 9B (with GRAM domain) iso...    28   5.7  

>gi|239749944 PREDICTED: similar to Parkinson disease 7 domain
           containing 1 isoform 1 [Homo sapiens]
          Length = 183

 Score =  370 bits (949), Expect = e-103
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN 60
           MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN
Sbjct: 1   MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN 60

Query: 61  ARWVQDFRLKAYASPAKLESIDEPICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCEL 120
           ARWVQDFRLKAYASPAKLESIDEPICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCEL
Sbjct: 61  ARWVQDFRLKAYASPAKLESIDEPICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCEL 120

Query: 121 VRAPGFARLPLVVEDFVKDSGACFSASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLC 180
           VRAPGFARLPLVVEDFVKDSGACFSASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLC
Sbjct: 121 VRAPGFARLPLVVEDFVKDSGACFSASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLC 180

Query: 181 GSR 183
           GSR
Sbjct: 181 GSR 183


>gi|239749942 PREDICTED: similar to Parkinson disease 7 domain
           containing 1 isoform 2 [Homo sapiens]
          Length = 219

 Score =  350 bits (898), Expect = 4e-97
 Identities = 182/219 (83%), Positives = 183/219 (83%), Gaps = 36/219 (16%)

Query: 1   MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN 60
           MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN
Sbjct: 1   MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN 60

Query: 61  ARWVQDFRLKAYASPAKLESID------------------------------------EP 84
           ARWVQDFRLKAYASPAKLESID                                    +P
Sbjct: 61  ARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKP 120

Query: 85  ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF 144
           ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF
Sbjct: 121 ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF 180

Query: 145 SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSR 183
           SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSR
Sbjct: 181 SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSR 219


>gi|32699045 Parkinson disease 7 domain containing 1 [Homo sapiens]
          Length = 220

 Score =  350 bits (898), Expect = 4e-97
 Identities = 182/219 (83%), Positives = 183/219 (83%), Gaps = 36/219 (16%)

Query: 1   MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN 60
           MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN
Sbjct: 1   MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN 60

Query: 61  ARWVQDFRLKAYASPAKLESID------------------------------------EP 84
           ARWVQDFRLKAYASPAKLESID                                    +P
Sbjct: 61  ARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKP 120

Query: 85  ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF 144
           ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF
Sbjct: 121 ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF 180

Query: 145 SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSR 183
           SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSR
Sbjct: 181 SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSR 219


>gi|112807234 G protein-coupled receptor, family C, group 6, member
           A [Homo sapiens]
          Length = 926

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 23  VSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESNARWVQDFRLKAYASPAKLESID 82
           +SA +++    ++   FN    T   KA + +   E N     DF L  YA P  + SI 
Sbjct: 361 LSACAYVKDTDLSQCIFNHSQRTLAYKANKAI---ERNFVMRNDF-LWDYAEPGLIHSIQ 416

Query: 83  EPICAVGHGVAALCCATNEDRSWVFDSYSLTG 114
             + A+G+ +  LC A +      F  + L G
Sbjct: 417 LAVFALGYAIRDLCQARDCQNPNAFQPWELLG 448


>gi|8923009 non-SMC element 4 homolog A [Homo sapiens]
          Length = 385

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 130 PLVVEDFVKDSGACFSASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGS 182
           PL  E+ ++D  +      PD   +V D   +TG+ A +T        FL GS
Sbjct: 175 PLEAEELIRDEDS------PDFEFIVYDSWKITGRTAENTFNKTHTFHFLLGS 221


>gi|54112394 calcium channel, voltage-dependent, alpha 2/delta subunit
            2 isoform b [Homo sapiens]
          Length = 1143

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 114  GPSVCELVRAPGFARLPLVVEDF--VKDSGAC-FSASEPDAVHVVLDRHLV 161
            GP  CELV+ P + R P +  D+   +D+  C   AS P ++ V++   L+
Sbjct: 1072 GPEQCELVQRPRYRRGPHICFDYNATEDTSDCGRGASFPPSLGVLVSLQLL 1122


>gi|54112392 calcium channel, voltage-dependent, alpha 2/delta subunit
            2 isoform a [Homo sapiens]
          Length = 1145

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 114  GPSVCELVRAPGFARLPLVVEDF--VKDSGAC-FSASEPDAVHVVLDRHLV 161
            GP  CELV+ P + R P +  D+   +D+  C   AS P ++ V++   L+
Sbjct: 1074 GPEQCELVQRPRYRRGPHICFDYNATEDTSDCGRGASFPPSLGVLVSLQLL 1124


>gi|45597177 TBC1 domain family, member 9B (with GRAM domain)
           isoform b [Homo sapiens]
          Length = 1233

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 126 FARLPLVVEDFVKDSGACFSASEPDAVHVVLDRHLVT---GQNASSTVPA 172
           F +L +  + F+ ++  CF++ E DA H+++    VT     ++SS +P+
Sbjct: 314 FNKLHIPGQMFISNNYICFASKEEDACHLIIPLREVTIVEKADSSSVLPS 363


>gi|45597175 TBC1 domain family, member 9B (with GRAM domain)
           isoform a [Homo sapiens]
          Length = 1250

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 126 FARLPLVVEDFVKDSGACFSASEPDAVHVVLDRHLVT---GQNASSTVPA 172
           F +L +  + F+ ++  CF++ E DA H+++    VT     ++SS +P+
Sbjct: 314 FNKLHIPGQMFISNNYICFASKEEDACHLIIPLREVTIVEKADSSSVLPS 363


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,099,424
Number of Sequences: 37866
Number of extensions: 287431
Number of successful extensions: 525
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 11
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.