Search of human proteins with 117938262

Search of human proteins with 117938262

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|117938262 tachykinin 4 isoform delta [Homo sapiens]
         (76 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|117938262 tachykinin 4 isoform delta [Homo sapiens]                153   3e-38
gi|117938260 tachykinin 4 isoform gamma [Homo sapiens]                144   1e-35
gi|117938258 tachykinin 4 isoform beta [Homo sapiens]                 141   1e-34
gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]              137   1e-33
gi|117938256 tachykinin 4 isoform alpha [Homo sapiens]                131   1e-31
gi|194294556 SET binding protein 1 isoform b [Homo sapiens]            26   6.1  
gi|194294554 SET binding protein 1 isoform a [Homo sapiens]            26   6.1  
gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens]         26   7.9  
gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]         26   7.9  

>gi|117938262 tachykinin 4 isoform delta [Homo sapiens]
          Length = 76

 Score =  153 bits (386), Expect = 3e-38
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
          MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60

Query: 61 MGKRVGGREDEAQGSE 76
          MGKRVGGREDEAQGSE
Sbjct: 61 MGKRVGGREDEAQGSE 76


>gi|117938260 tachykinin 4 isoform gamma [Homo sapiens]
          Length = 87

 Score =  144 bits (364), Expect = 1e-35
 Identities = 76/87 (87%), Positives = 76/87 (87%), Gaps = 11/87 (12%)

Query: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
          MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60

Query: 61 MGKRVG-----------GREDEAQGSE 76
          MGKRVG           GREDEAQGSE
Sbjct: 61 MGKRVGGRPLIQPRRKKGREDEAQGSE 87


>gi|117938258 tachykinin 4 isoform beta [Homo sapiens]
          Length = 96

 Score =  141 bits (355), Expect = 1e-34
 Identities = 76/96 (79%), Positives = 76/96 (79%), Gaps = 20/96 (20%)

Query: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
          MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60

Query: 61 MGKRVG--------------------GREDEAQGSE 76
          MGKRVG                    GREDEAQGSE
Sbjct: 61 MGKRVGAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 96


>gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]
          Length = 107

 Score =  137 bits (346), Expect = 1e-33
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
          MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60

Query: 61 MGKRVGGR 68
          MGKRVGGR
Sbjct: 61 MGKRVGGR 68


>gi|117938256 tachykinin 4 isoform alpha [Homo sapiens]
          Length = 113

 Score =  131 bits (329), Expect = 1e-31
 Identities = 68/74 (91%), Positives = 68/74 (91%), Gaps = 6/74 (8%)

Query: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW------EGAGPSIQLQLQEVKTGKA 54
          MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW      EGAGPSIQLQLQEVKTGKA
Sbjct: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWVIVALEEGAGPSIQLQLQEVKTGKA 60

Query: 55 SQFFGLMGKRVGGR 68
          SQFFGLMGKRVGGR
Sbjct: 61 SQFFGLMGKRVGGR 74


>gi|194294556 SET binding protein 1 isoform b [Homo sapiens]
          Length = 242

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 18  VAGDGGEEQTLS-TEAETWEGAGPSIQLQLQEVKTGK 53
           VAGDG EEQ  S  EA   EG   S++L++Q  K  K
Sbjct: 81  VAGDGLEEQEFSIKEANFTEG---SLKLKIQTTKRAK 114


>gi|194294554 SET binding protein 1 isoform a [Homo sapiens]
          Length = 1596

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 18  VAGDGGEEQTLS-TEAETWEGAGPSIQLQLQEVKTGK 53
           VAGDG EEQ  S  EA   EG   S++L++Q  K  K
Sbjct: 81  VAGDGLEEQEFSIKEANFTEG---SLKLKIQTTKRAK 114


>gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens]
          Length = 114

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/15 (73%), Positives = 11/15 (73%)

Query: 53 KASQFFGLMGKRVGG 67
          K  QFFGLMGKR  G
Sbjct: 60 KPQQFFGLMGKRDAG 74


>gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]
          Length = 96

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/15 (73%), Positives = 11/15 (73%)

Query: 53 KASQFFGLMGKRVGG 67
          K  QFFGLMGKR  G
Sbjct: 60 KPQQFFGLMGKRDAG 74


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,985,607
Number of Sequences: 37866
Number of extensions: 106418
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 12
length of query: 76
length of database: 18,247,518
effective HSP length: 48
effective length of query: 28
effective length of database: 16,429,950
effective search space: 460038600
effective search space used: 460038600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.