Search of human proteins with 117938260

Search of human proteins with 117938260

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|117938260 tachykinin 4 isoform gamma [Homo sapiens]
         (87 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|117938260 tachykinin 4 isoform gamma [Homo sapiens]                175   6e-45
gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]              163   2e-41
gi|117938256 tachykinin 4 isoform alpha [Homo sapiens]                157   2e-39
gi|117938262 tachykinin 4 isoform delta [Homo sapiens]                144   1e-35
gi|117938258 tachykinin 4 isoform beta [Homo sapiens]                 144   2e-35
gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens]         29   0.70 
gi|194294556 SET binding protein 1 isoform b [Homo sapiens]            26   5.9  
gi|194294554 SET binding protein 1 isoform a [Homo sapiens]            26   5.9  
gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]         26   7.7  

>gi|117938260 tachykinin 4 isoform gamma [Homo sapiens]
          Length = 87

 Score =  175 bits (444), Expect = 6e-45
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
          MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60

Query: 61 MGKRVGGRPLIQPRRKKGREDEAQGSE 87
          MGKRVGGRPLIQPRRKKGREDEAQGSE
Sbjct: 61 MGKRVGGRPLIQPRRKKGREDEAQGSE 87


>gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]
          Length = 107

 Score =  163 bits (413), Expect = 2e-41
 Identities = 87/107 (81%), Positives = 87/107 (81%), Gaps = 20/107 (18%)

Query: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
           MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60

Query: 61  MGKRVGGRPLIQPRRKK--------------------GREDEAQGSE 87
           MGKRVGGRPLIQPRRKK                    GREDEAQGSE
Sbjct: 61  MGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 107


>gi|117938256 tachykinin 4 isoform alpha [Homo sapiens]
          Length = 113

 Score =  157 bits (396), Expect = 2e-39
 Identities = 87/113 (76%), Positives = 87/113 (76%), Gaps = 26/113 (23%)

Query: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW------EGAGPSIQLQLQEVKTGKA 54
           MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW      EGAGPSIQLQLQEVKTGKA
Sbjct: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWVIVALEEGAGPSIQLQLQEVKTGKA 60

Query: 55  SQFFGLMGKRVGGRPLIQPRRKK--------------------GREDEAQGSE 87
           SQFFGLMGKRVGGRPLIQPRRKK                    GREDEAQGSE
Sbjct: 61  SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 113


>gi|117938262 tachykinin 4 isoform delta [Homo sapiens]
          Length = 76

 Score =  144 bits (364), Expect = 1e-35
 Identities = 76/87 (87%), Positives = 76/87 (87%), Gaps = 11/87 (12%)

Query: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
          MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60

Query: 61 MGKRVGGRPLIQPRRKKGREDEAQGSE 87
          MGKRVG           GREDEAQGSE
Sbjct: 61 MGKRVG-----------GREDEAQGSE 76


>gi|117938258 tachykinin 4 isoform beta [Homo sapiens]
          Length = 96

 Score =  144 bits (362), Expect = 2e-35
 Identities = 78/96 (81%), Positives = 81/96 (84%), Gaps = 9/96 (9%)

Query: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60
          MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL
Sbjct: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWEGAGPSIQLQLQEVKTGKASQFFGL 60

Query: 61 MGKRVGGRPL------IQPRRK---KGREDEAQGSE 87
          MGKRVG   L      +  +R    +GREDEAQGSE
Sbjct: 61 MGKRVGAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 96


>gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens]
          Length = 114

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 53 KASQFFGLMGKRVGGRPLIQPRRKK 77
          K  QFFGLMGKR  G   I  +R K
Sbjct: 60 KPQQFFGLMGKRDAGHGQISHKRHK 84


>gi|194294556 SET binding protein 1 isoform b [Homo sapiens]
          Length = 242

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 18  VAGDGGEEQTLS-TEAETWEGAGPSIQLQLQEVKTGK 53
           VAGDG EEQ  S  EA   EG   S++L++Q  K  K
Sbjct: 81  VAGDGLEEQEFSIKEANFTEG---SLKLKIQTTKRAK 114


>gi|194294554 SET binding protein 1 isoform a [Homo sapiens]
          Length = 1596

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 18  VAGDGGEEQTLS-TEAETWEGAGPSIQLQLQEVKTGK 53
           VAGDG EEQ  S  EA   EG   S++L++Q  K  K
Sbjct: 81  VAGDGLEEQEFSIKEANFTEG---SLKLKIQTTKRAK 114


>gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]
          Length = 96

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/15 (73%), Positives = 11/15 (73%)

Query: 53 KASQFFGLMGKRVGG 67
          K  QFFGLMGKR  G
Sbjct: 60 KPQQFFGLMGKRDAG 74


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,565,033
Number of Sequences: 37866
Number of extensions: 138003
Number of successful extensions: 244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 10
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.