Search of human proteins with 10863955

Search of human proteins with 10863955

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10863955 phosphoserine aminotransferase 1 isoform 2 [Homo
sapiens]
         (324 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10863955 phosphoserine aminotransferase 1 isoform 2 [Homo sap...   649   0.0  
gi|17402893 phosphoserine aminotransferase 1 isoform 1 [Homo sap...   627   e-180
gi|169164029 PREDICTED: similar to hCG1644578 [Homo sapiens]          124   1e-28
gi|169163248 PREDICTED: similar to hCG1644578 [Homo sapiens]          122   6e-28
gi|110825982 hect domain and RLD 5 [Homo sapiens]                      29   6.5  

>gi|10863955 phosphoserine aminotransferase 1 isoform 2 [Homo
           sapiens]
          Length = 324

 Score =  649 bits (1673), Expect = 0.0
 Identities = 324/324 (100%), Positives = 324/324 (100%)

Query: 1   MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV 60
           MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV
Sbjct: 1   MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV 60

Query: 61  RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT 120
           RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT
Sbjct: 61  RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT 120

Query: 121 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN 180
           INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN
Sbjct: 121 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN 180

Query: 181 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY 240
           FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY
Sbjct: 181 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY 240

Query: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVSVGGIRASLY 300
           NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVSVGGIRASLY
Sbjct: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVSVGGIRASLY 300

Query: 301 NAVTIEDVQKLAAFMKKFLEMHQL 324
           NAVTIEDVQKLAAFMKKFLEMHQL
Sbjct: 301 NAVTIEDVQKLAAFMKKFLEMHQL 324


>gi|17402893 phosphoserine aminotransferase 1 isoform 1 [Homo
           sapiens]
          Length = 370

 Score =  627 bits (1616), Expect = e-180
 Identities = 324/370 (87%), Positives = 324/370 (87%), Gaps = 46/370 (12%)

Query: 1   MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV 60
           MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV
Sbjct: 1   MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV 60

Query: 61  RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT 120
           RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT
Sbjct: 61  RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT 120

Query: 121 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN 180
           INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN
Sbjct: 121 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN 180

Query: 181 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY 240
           FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY
Sbjct: 181 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY 240

Query: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYV---------- 290
           NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYV          
Sbjct: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSK 300

Query: 291 ------------------------------------SVGGIRASLYNAVTIEDVQKLAAF 314
                                               SVGGIRASLYNAVTIEDVQKLAAF
Sbjct: 301 MNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF 360

Query: 315 MKKFLEMHQL 324
           MKKFLEMHQL
Sbjct: 361 MKKFLEMHQL 370


>gi|169164029 PREDICTED: similar to hCG1644578 [Homo sapiens]
          Length = 184

 Score =  124 bits (310), Expect = 1e-28
 Identities = 66/105 (62%), Positives = 76/105 (72%), Gaps = 12/105 (11%)

Query: 32  YKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLI 91
           +KG+GISVLEM++RSSDF KIIN TENLV ELLA+P+NY         C           
Sbjct: 75  HKGIGISVLEMNNRSSDFTKIINTTENLVWELLAIPNNYCTRSFLCKKC----------- 123

Query: 92  GLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPD 136
            LKAGRCA+YVVTGAWSAKAAE +KKF  +NI +PKLGSY KIPD
Sbjct: 124 -LKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPD 167


>gi|169163248 PREDICTED: similar to hCG1644578 [Homo sapiens]
          Length = 184

 Score =  122 bits (305), Expect = 6e-28
 Identities = 65/105 (61%), Positives = 76/105 (72%), Gaps = 12/105 (11%)

Query: 32  YKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLI 91
           +KG+GISVLEM++RSS+F KIIN TENLV ELLA+P+NY         C           
Sbjct: 75  HKGIGISVLEMNNRSSNFTKIINTTENLVWELLAIPNNYCTRSFLCKKC----------- 123

Query: 92  GLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPD 136
            LKAGRCA+YVVTGAWSAKAAE +KKF  +NI +PKLGSY KIPD
Sbjct: 124 -LKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPD 167


>gi|110825982 hect domain and RLD 5 [Homo sapiens]
          Length = 1024

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 21/119 (17%)

Query: 188 VSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEY-------KVQAGNSSLY 240
           +SK G +FA  Q   G  GV           F     P ++E+       ++ AG +   
Sbjct: 153 LSKGGELFAWGQNLHGQLGVG--------RKFPSTTTPQIVEHLAGVPLAQISAGEAH-- 202

Query: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVSVGGIRASL 299
                 ++ + G +  W KN  G   +    S    ++ E +DN +  +V+ GG  ++L
Sbjct: 203 ----SMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSAL 257


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,982,177
Number of Sequences: 37866
Number of extensions: 487293
Number of successful extensions: 856
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 6
length of query: 324
length of database: 18,247,518
effective HSP length: 102
effective length of query: 222
effective length of database: 14,385,186
effective search space: 3193511292
effective search space used: 3193511292
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.